Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq12173 113 6e-20 seq88849 109 7e-19 seq625560 87.8 2e-12 seq7224 86.0 8e-12 seq178609 84.2 3e-11 >seq12173 Length=3197 Score = 113 bits (124), Expect = 6e-20 Identities = 304/456 (67%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| ||||||||||||||||||||||| || | ||| ||| ||||| Sbjct 1491 TAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1432 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTG-GCACCCCAACTTGTTTGAGGAGACG 122489 |||| || || || ||||| | || | ||| || | | | ||| || || Sbjct 1431 CAGTCGAACGGGTTGGCGGCGTTGTACATCTTGGCGCAGCCGAGCGCCAT-GAGCAGGCG 1373 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | || |||||||||||| | ||| | | |||||| |||| |||| || Sbjct 1372 GTCTGCGACGAACTCAATGTACTGGCCCATGAGGCCGGCGTTCATGCCGACGAGGGCGCA 1313 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 ||||| ||||| |||||||| | |||| || || || || || ||||| || | Sbjct 1312 GGGGAGCGCGTCGCAGATGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG 1253 Query 122610 GATAGTTTCGGTAGTGGGTCTA--TTAC----GCAAAGTC--TTGAAGAGCTCCACGGCA 122661 || ||| | | | || | || | | || | | || ||| || ||| Sbjct 1252 GACG----CGGGACTCG-TCAAGCTTGCTGTTGAGGAGGCCGTAGAGGAGG--CA-GGCG 1201 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || |||| | ||||| || || || || || | || |||||| || || ||| Sbjct 1200 AAGTCGCAGTGGCGGCCCTCGTCACGCGAGATGAGCACGTTGGAGAAGGTGAGGCCGGGC 1141 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 ||||| ||||||||||| | ||| | || |||||||| || || |||||||| || ||| Sbjct 1140 ATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATGCCC 1081 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || || | || || ||||||||| Sbjct 1080 TCGACGCATGCGAAGGCGACGAGTCGCTCGGCGAAG 1045 >seq88849 Length=1251 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || || || || || || || |||||| || || |||||||| || Sbjct 345 GTGGAGCCCCTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCC 404 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 405 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 464 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || ||||| | | ||| || |||||| Sbjct 465 TGCGAACGCCACGATGCGCTCCGCGAAG 492 >seq625560 Length=224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 |||||||||||||| ||||| | || || || || || || ||||||||||| | || Sbjct 221 AAGCCATCCATCTCCGTGAGAAGCTGGTTGATGGTCTGCTCCCTCTCATCATTCCC--GC 164 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 ||| ||||||| || ||| | || || || |||||||||||||||||||| || | Sbjct 163 CGCCCATCCCAGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCAATGAAGACGATGC 104 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | ||| | || || ||||| | ||||| ||||| ||||| | Sbjct 103 AGGGCGCCTTGGCCTTGGCCTTCTCGAACAGATCCCTCACCCTGGACGCACCAACACCGA 44 Query 11718 CAAACATCTCCACAAA 11733 | || | ||| || || Sbjct 43 CGAAGAGCTCGACGAA 28 >seq7224 Length=3831 Score = 86.0 bits (94), Expect = 8e-12 Identities = 163/239 (68%), Gaps = 12/239 (5%) Strand=Plus/Plus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 || ||||| |||| ||| | || ||||| | ||||||||||||||||| || | Sbjct 2514 TTGGTGGCAGCAACAACAATGATTCCAGTGTTTCCCTCAAAGCCATCCATCTCAGTCAAC 2573 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCAC---TGCGT 11617 | ||||| | || || || || |||||||| | ||||||| || | | | Sbjct 2574 AGCTGATTGAGAGTCTGCTCCCTTTCATCATTCCC------ACCACCAATACCTGTTCCT 2627 Query 11618 ---TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG 11674 ||| | || || |||||||| ||||||| || || || || || ||| || | Sbjct 2628 CTCTGCCTTCCAACGGCATCAATTTCATCAACAAACACGATGCAAGGAGCATTCTCCTTG 2687 Query 11675 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || | | |||||||| || || | |||||| |||||||||||||||||||| || Sbjct 2688 GCCTTCTTGAAGAGATCACGGACACGGGAGGCACCAACACCAACAAACATCTCCACGAA 2746 >seq178609 Length=759 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||| || || |||||||| | |||||||||||| || || | ||||||||| | Sbjct 517 TGGTAGAGCAATTGATGCAAGATTGCAAACAGCAGTTTCGGTGGGACTTGTGTACTCAAT 458 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 || || ||||| ||||||||| |||||| || |||| ||||| || ||||| ||| | Sbjct 457 TATCTCCGTACACAAGTTGGAAGACTTAATTGTGCCCAGATTCTGCTGATTACTTTTCCT 398 Query 111349 GTTGCACGCATCCT 111362 ||||| | |||| Sbjct 397 ATTGCAAGAGTCCT 384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622802220528000