Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq12173 165 1e-35 seq88849 158 1e-33 seq353702 105 8e-18 seq7224 102 1e-16 seq47147 91.5 2e-13 seq625560 84.2 3e-11 >seq12173 Length=3197 Score = 165 bits (182), Expect = 1e-35 Identities = 314/453 (69%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || |||||||| |||||||| ||||| || | || | ||| |||||| Sbjct 1491 TAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1432 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 | || || ||||| | ||| | || |||| | || | | |||| || || Sbjct 1431 CAGTCGAACGGGTTGGCGGCGTTGTACATCT-TGGCGCAGCCGAGCGCCATGAGCAGGCG 1373 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||||||||||| ||| ||| |||||| |||| |||| || Sbjct 1372 GTCTGCGACGAACTCAATGTACTGGCCCATGAGGCCGGCGTTCATGCCGACGAGGGCGCA 1313 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||||||| |||||||| || |||| ||||| || || || ||||| || | Sbjct 1312 GGGGAGCGCGTCGCAGATGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG 1253 Query 129967 AATG---GTCTCCGTGCCAGGT--CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 130021 | | | ||| || | || | || ||| | | | || ||| || ||| || Sbjct 1252 GACGCGGGACTC-GT-CAAGCTTGCTGTTGAGGAGGCCGTAGAGGAGG--CA-GGCGAAG 1198 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || |||| | ||||||||||| |||||||| | || |||||| || || |||||| Sbjct 1197 TCGCAGTGGCGGCCCTCGTCACGCGAGATGAGCACGTTGGAGAAGGTGAGGCCGGGCATG 1138 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || ||||||||||| | |||||| || || || || ||||| |||||||| || ||||| Sbjct 1137 AGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATGCCCTCG 1078 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | ||| ||||| || ||| Sbjct 1077 ACGCATGCGAAGGCGACGAGTCGCTCGGCGAAG 1045 >seq88849 Length=1251 Score = 158 bits (174), Expect = 1e-33 Identities = 310/451 (69%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | || | ||| |||||| Sbjct 46 TACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCATC 105 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGACG 129846 | || || ||||| | | ||| | | ||| | | || | | |||| || || Sbjct 106 CAGTCGAAGGGGTTGGTGGCGTTGTAGAGC-CTGCCGCAGCCGAGCGCCATGAGCAGGCG 164 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| ||| ||| |||||| |||| ||| || Sbjct 165 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 224 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||| |||||||| ||| |||| | ||| ||||| ||||| |||| ||||| || Sbjct 225 TGGCAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACAGCCTCCCTGACGATCTCGAA 284 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 | | | ||| || |||| | | || | ||| | |||| ||| || || Sbjct 285 CACGCGCGACTC-GT-CCAGCT-TGCCCCGGAGGATCTCGTAGAGGAGGCAGGCGAAGTC 341 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||| |||||||| || |||||||| || || |||||| || || |||||||| Sbjct 342 GCAGTGGAGCCCCTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAG 401 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||||||||||| | |||||| || || || || ||||| ||||||||||| ||||| || Sbjct 402 CCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGAC 461 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || |||||||| | || ||||| || ||| Sbjct 462 GCATGCGAACGCCACGATGCGCTCCGCGAAG 492 >seq353702 Length=449 Score = 105 bits (116), Expect = 8e-18 Identities = 276/410 (67%), Gaps = 12/410 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| ||||| || | || | ||| |||||| Sbjct 404 TACTCGCCGACGCGCTTCTCGAAAAAGTTGGTCTTTCCCTGCAGGGAGATGAGCTCCATC 345 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTG--GCACTCCAATCTGTTTGAGGAGAC 129845 | || || ||||| | | ||| | | ||| |||| || | | |||| || | Sbjct 344 CAGTCGAAGGGGTTGGTGGCGTTGTAGAGC-CTGCCGCAC-CCGAGCGCCATGAGCAGGC 287 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | |||| |||| ||||||| ||| ||| |||||| || | ||| | Sbjct 286 GGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCAACGAGCGCGC 227 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || |||||||| ||| |||| | ||| ||||| || || |||| ||||| || Sbjct 226 ACGGCAGCGCGTCGCAGACGAACTCGCGCTCGATGTCAACTGCCTCCCTGACGATCTCGA 167 Query 129966 GAATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAAC 130021 | | | ||| || |||| | | || | ||| | |||| |||| | || Sbjct 166 AGACGCGGGACTC-GT-CCAGCT-TGCCCCGGAGGATCTCGTAGAGGAGGCACG-CGAAG 111 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| || || ||||| || |||||||| || || |||||| || || |||||| Sbjct 110 TCGCAGTGCAGCCCTTCGTCGCGTGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATG 51 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 130131 || ||||||||||| | |||||| || || || || ||||| |||||||| Sbjct 50 AGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAA 1 >seq7224 Length=3831 Score = 102 bits (112), Expect = 1e-16 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||||||||||||||||||||| || ||||||| || || || | |||||||||| || Sbjct 2550 TCAAAGCCATCCATCTCAGTCAACAGCTGATTGAGAGTCTGCTCCCTTTCATCATTCCCA 2609 Query 14210 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | ||| | | | ||| | || ||||| ||||||||||| | || ||||| Sbjct 2610 CCACCAATACCTGTTCCTCTCTGCCTTCCAACGGCATCAATTTCATCAACAAACACGATG 2669 Query 14270 CATGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || || ||| || ||| |||| |||| ||| || || | |||||| |||| Sbjct 2670 CAAGGAGCATTCTCCTTGGC--CTTCTTGAAGAGATCACGGACACGGGAGGCACCAACAC 2727 Query 14328 CCACAAACATCTCCACAAA 14346 | |||||||||||||| || Sbjct 2728 CAACAAACATCTCCACGAA 2746 >seq47147 Length=1785 Score = 91.5 bits (100), Expect = 2e-13 Identities = 310/477 (65%), Gaps = 12/477 (3%) Strand=Plus/Minus Query 14071 GCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGAC 14130 ||| || |||||||| || ||| |||| ||||| || ||||||||| || ||||| || Sbjct 1785 GCGGCCCGGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGGCGGTTCGTGGCGGCGATCAC 1726 Query 14131 AACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTG 14190 | || ||| | || | ||||| |||||||| || | || || |||| || || Sbjct 1725 GATGACGCCGCTGTCACCACTGAAGCCGTCCATCTCGGTGAGCAGCTGGTTGAGCGTCTG 1666 Query 14191 TTCGCGTTCATCATT--CGCAGGC-ATACCACCCGCACTGCGTTGCTTACCGACGGCGTC 14247 || | || || || ||| | | || || || | ||| ||| ||||||||||| Sbjct 1665 CTCCCTCTCGTCGTTGCCGCCGCCGATGCC---CGTGCCGCGCTGCCGGCCGACGGCGTC 1609 Query 14248 AATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCG 14307 || || |||||||| |||| || || || || ||| | ||| | || || Sbjct 1608 GATCTCGTCGATGAACACGAGGCACGGCGCGTTGTCCTTGGCCTTGTTAAACAGGTCCCG 1549 Query 14308 CACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGAT 14367 ||| | | || || || || || |||||||| | || | | |||| || Sbjct 1548 CACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCCGACCCGGAGAGCGAGAA 1489 Query 14368 GAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 |||||| ||| | || |||||||| || ||| || || |||||||| ||||| || Sbjct 1488 GAAGGGCACGCCGGCCTCCCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCGGTCCCCGG 1429 Query 14428 TTTCCCTGCGAGAAGGGCACCACGTGGGATCCT-GGCACCACTGCC--AAAGTAGCGTTC 14484 || | || || | || |||||||| | | |||||||| || | | || Sbjct 1428 AGGGCCGACCAGCAGCACGCCCTTGGGGATCCTCGCCCCCACTGCCGTGAACTTG---TC 1372 Query 14485 AGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCC 14541 || || ||||| | |||||| || | || || | |||||| |||||| ||| Sbjct 1371 CGGGAACTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTCGCCTCGTCGACGCC 1315 >seq625560 Length=224 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 |||||||||||||| || | || || |||||||| || || | ||||||||| | || Sbjct 221 AAGCCATCCATCTCCGTGAGAAGCTGGTTGATGGTCTGCTCCCTCTCATCATTCCC--GC 164 Query 14213 ATACCACCC--GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 ||| || |||| || ||| | |||||||||||||| ||||| ||||| ||||| | Sbjct 163 CGCCCATCCCAGCACCACGCTGCCTCCCGACGGCGTCAATCTCATCAATGAAGACGATGC 104 Query 14271 ATGG 14274 | || Sbjct 103 AGGG 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613285335480800