Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12173 201 1e-46 seq88849 179 4e-40 seq353702 131 2e-25 >seq12173 Length=3197 Score = 201 bits (222), Expect = 1e-46 Identities = 581/876 (66%), Gaps = 35/876 (4%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || ||||||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 632 TTCCCGATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 691 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGAC---AAGCTCAATTAC 59678 | | |||||| | |||||| || ||| | | |||||| | |||| | Sbjct 692 ACGGCGGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACGGCACGCTCTCCCCC 751 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || || Sbjct 752 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTC 811 Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | | | | | ||| || |||||| | ||||||||||| | Sbjct 812 CTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTCCAGGTCGCCGAGGCCCGCGCC 868 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| ||||||||| || | Sbjct 869 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGCT 927 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||| | || || Sbjct 928 CGAGACCTACATCCGCGACGGCGCCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACCGT 987 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCA 59972 |||||| || | || || | |||||||||| ||||| || | | |||| Sbjct 988 CCCCGCCGTGCGCCGCAAGGCCGTCTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC-- 1045 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || |||||||| || || || |||||||| ||||| ||| Sbjct 1046 TTCGCCGAGCGACTCGTCGCCTTCGCATGCGTCGAGGGCATATTCTTCTCGGGCTCCTTC 1105 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| || |||||||| ||||| | |||||||||| | Sbjct 1106 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGCCTCACCTTCTCCAACGTG 1165 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151 || || || || |||||||||| ||| || || || || | ||||| | ||| Sbjct 1166 CTCATCTCGCGTGACGAGGGCCGCCACTGCGACTTCGC-CTGCCTCCTCTACGGCCTCCT 1224 Query 60152 --ATTGGAAAAATG-CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAG 60207 | | || || | ||| | | | | |||| || | | | | | || Sbjct 1225 CAACAGCAAGCTTGACGAGTCCCGCG---TCCGCGAGATCGTCGCCGACGCCGT-CGACA 1280 Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267 | ||||| ||||||||| || ||||| || ||| ||| | || ||| |||| || Sbjct 1281 TCGAGAGGGAGTTCATCTGCGACGCGCTCCCCTGCGCCCTCGTCGGCATGAACGCCGGCC 1340 Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATG--GCCCAGTTTGGAGA 60322 ||| ||||||||| |||| ||||| |||||| |||||| || | | | | | Sbjct 1341 TCATGGGCCAGTACATTGAGTTCGTCGCAGACCGCCTGCTCATGGCGCTCGGCTGCGCCA 1400 Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 || || ||| || ||||| ||||||||||||||| |||||| || | || Sbjct 1401 AG-----ATGTACAACGCCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGG 1455 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||||||||| ||||| || || Sbjct 1456 CAAGACCAACTTCTTTGAGAAGCGTGTCGGCGACTA 1491 >seq88849 Length=1251 Score = 179 bits (198), Expect = 4e-40 Identities = 446/661 (67%), Gaps = 22/661 (3%) Strand=Plus/Minus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || || ||| | |||||||| || | ||||||| | ||| ||| || |||| || Sbjct 695 GACGTGCAGGTGGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 637 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| ||||||||| | ||||| | | || || | | ||||||| Sbjct 636 CCACTCGGAGATGTACTCGCTGCTCATCGAGACCTACATCCGCGACGCCGCCGAGAAGGA 577 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | || ||||| ||||| || || |||||| || | || || || ||||| | Sbjct 576 CCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTGCGCCGCAAGGCCGACTGGGCGCT 517 Query 59948 GCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 | ||||| || | | |||| || || | || || | || || |||||||| Sbjct 516 CCGCTGGATCGACGGCGGCGAGCGC--TTCGCGGAGCGCATCGTGGCGTTCGCATGCGTC 459 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || ||||||||||| ||||| ||||| || || ||||||||||| ||||| || ||| Sbjct 458 GAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTC 399 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||| ||||| | |||||||||||||| || || || |||||||| ||||| || Sbjct 398 ATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCACGCGACGAGGGGCTCCACTGCGAC 339 Query 60126 TTTGCAGTGAC-GCTCTATTCACACCTATTGG--AAAAATGCCCTTCCAAGGATATTCAC 60182 || || || | ||||| ||| || || | | | | | || | Sbjct 338 TTCGC-CTGCCTCCTCTACGAGATCCTCCGGGGCAAGCTGGACGAGTCGCGCGTGTT--C 282 Query 60183 AAGATTGTTCAGTG-GGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 |||| | |||| | |||| ||| | ||| |||||||| || || ||||| ||||| Sbjct 281 GAGATCG-TCAGGGAGGCTGTTGACATCGAGCGCGAGTTCGTCTGCGACGCGCTGCCATG 223 Query 60242 CAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG 60301 | ||| | || ||| ||| | |||| |||||||| |||| ||||| ||||| Sbjct 222 CGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCG 163 Query 60302 C---CTCATGGC-CCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACT 60357 | |||||||| | | || | ||| | ||| || | ||||| ||||||| Sbjct 162 CCTGCTCATGGCGCTCGGCTGCGGCAGG----CTCTACAACGCCACCAACCCCTTCGACT 107 Query 60358 GGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATT 60417 |||||||| |||||| || | || ||||||||||| || |||||||| ||||| || | Sbjct 106 GGATGGAGCTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAGT 47 Query 60418 A 60418 | Sbjct 46 A 46 >seq353702 Length=449 Score = 131 bits (144), Expect = 2e-25 Identities = 284/413 (69%), Gaps = 18/413 (4%) Strand=Plus/Plus Query 60015 TTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGC 60074 |||||||| ||||| ||||| || || ||||||||||| ||||| || |||||||| ||| Sbjct 1 TTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCCGGC 60 Query 60075 CTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 || | |||||||||||||| || || || ||||| || || || || || || ||| Sbjct 61 CTCACCTTCTCCAACGAGCTCATCTCACGCGACGAAGGGCTGCACTGCGACTTCGC-GTG 119 Query 60135 AC-GCTCTATTCACACCT-ATTGGAAAAATG--CCCTTCCAAGGATATTCACAAGATTGT 60190 | ||||| ||| || || || | ||| | | || | |||| | Sbjct 120 CCTCCTCTACGAGATCCTCCGGGGCAAGCTGGACGAGTCC-CGCGTCTT--CGAGATCG- 175 Query 60191 TCAGTG-GGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCA 60249 |||| | ||| ||| | ||| |||||||| || || ||||| || ||| ||| Sbjct 176 TCAGGGAGGCAGTTGACATCGAGCGCGAGTTCGTCTGCGACGCGCTGCCGTGCGCGCTCG 235 Query 60250 TAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCA 60306 | || ||| ||| | |||| |||||||| |||| ||||| |||||| |||| Sbjct 236 TTGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCA 295 Query 60307 TGGC-CCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAG 60365 |||| | | || | ||| | ||| || | ||||| ||||||||||||||| Sbjct 296 TGGCGCTCGGGTGCGGCAGG----CTCTACAACGCCACCAACCCCTTCGACTGGATGGAG 351 Query 60366 ACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||| || | || ||||||||||| || |||||||| ||||| || || Sbjct 352 CTCATCTCCCTGCAGGGAAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAGTA 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543957096859200