Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq88849 140 4e-28 seq12173 131 2e-25 seq94092 98.7 1e-15 seq479706 95.1 1e-14 seq486888 89.7 6e-13 seq75915 86.0 7e-12 seq19842 86.0 7e-12 >seq88849 Length=1251 Score = 140 bits (154), Expect = 4e-28 Identities = 320/470 (68%), Gaps = 15/470 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 388 AGGCCGGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 447 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 |||||||| ||||| || || || || || | ||| | |||||| | || ||| | | Sbjct 448 AAGATGCCCTCGACGCATGCGAACGCCACGATGCGCTCCGCGAA--GCGC-TCGCCGCCG 504 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || |||| || ||||| || Sbjct 505 TCGATCCAGCGGAGCGCCCAGTCGGCCTTGCGGCGCACGGCGGGGATGGTGTCGATGGCG 564 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| ||||||| ||| || || | | || || | || |||||| Sbjct 565 CGGAAGAGGCGGTCCTTCTCGGCGGCGTCGCGGATGTAGGTCTCGATGAGCAGCGAGTAC 624 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | ||||||| | |||||||| || Sbjct 625 ATCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGC 683 Query 75101 AATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 | ||| || || || || | | ||| ||||| | ||||||||||| ||| Sbjct 684 CACCTGCACGTCGGACATG-AAGCGGGACG-CGAGGTTCTCGAGCACGATGCCGTCGGAG 741 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTG 75215 |||||||| || || || || ||| ||||||||||| |||| ||||| || Sbjct 742 GCGGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGCCGTCGGTGAGGGTGGTG 801 Query 75216 TCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||||| | | |||| | | || | ||||||| |||||||||| Sbjct 802 TCCCAGTGGCGCGCGTCCGAGGAGAGGTCCACCTCCTCGGCCGTCCAGAA 851 >seq12173 Length=3197 Score = 131 bits (144), Expect = 2e-25 Identities = 491/753 (65%), Gaps = 24/753 (3%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| ||||| ||||||||||| || | || |||||| ||||||| Sbjct 1491 TAGTCGCCGACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 1432 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAG---G 74579 |||||||| ||||| || ||| || ||| | | | |||||||| | Sbjct 1431 CAGTCGAACGGGTTGGCGGCGTTGTACAT---CTTGGCGCAGCCGAGCGCCATGAGCAGG 1375 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || || | ||||||||| ||| || || | |||||||| ||| | Sbjct 1374 CGGTCTGCGACGAACTCAATGTACTGGCCCATGAGGCCGGCGTTCATGCCGACGAGGGCG 1315 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 || || || || ||| ||| ||||| ||||| | ||| || ||| |||| | Sbjct 1314 CAGGGGAGCGCGTCGCAGATGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCG 1255 Query 74700 TGAATGTCTTTGGAAGGG-CACTTTTCCC--TCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 | | | ||| | || || | | ||| | ||| || | || ||| || Sbjct 1254 CGGACGCG---GGACTCGTCAAGCTTGCTGTTGAGGAGGCCGTAGAGGAGGCA-GGCGAA 1199 Query 74756 CTC-CTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 || | | ||| ||| || || | || | | || || || | ||||| |||| Sbjct 1198 GTCGCAGTGGCG-GCCCTCGTCACGCGAGATGAGCACGTTGGAGAAGGTGAGGCCGGGCA 1140 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || || |||||||| | ||| |||||||| |||||||| || |||||| ||||| | Sbjct 1139 TGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAATATGCCCT 1080 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAGTC-ATCCAAG 74931 |||| || || |||||||| || || | ||||| | || ||| | ||| ||||| Sbjct 1079 CGACGCATGCGAAGGCGACGAGTCGCTCGGCGAA--GCGC-TCGCCGCCGTCGATCCAGC 1023 Query 74932 TCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGC 74991 | ||||| | || || || || || ||||| || |||| || ||||||||| Sbjct 1022 GCATGGCCCAGACGGCCTTGCGGCGCACGGCGGGGACGGTGTCGACGGCGCGGAAGAGGC 963 Query 74992 TTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051 ||||||| || || || | | || | || || |||||| |||| || | Sbjct 962 GGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCGGAGT 903 Query 75052 GAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACA 75110 | || |||| || ||| |||| | ||||||| | || ||||| || | ||| || Sbjct 902 GGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGGACG 844 Query 75111 TCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAA 75170 || || | | ||| ||||| | |||||||||||| ||||||||||| || Sbjct 843 TCGGACATGAACCTGGAGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAG 784 Query 75171 GCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 || || || ||| ||||||||||| ||| Sbjct 783 GCGAGCACGTGGGAGATGAAGTGGCGCTCGTCG 751 >seq94092 Length=1207 Score = 98.7 bits (108), Expect = 1e-15 Identities = 67/74 (91%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| ||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 210 TGCTTTCGTTGAGAGTTGATCTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 151 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 150 TGAGCTACGAAAGC 137 >seq479706 Length=331 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 74 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 14 TGAGCTACGAAAGC 1 >seq486888 Length=325 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 325 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 266 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 265 TGAGCTATGAAAGCAA 250 >seq75915 Length=1377 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1377 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1318 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1317 TGAGCTATGAAAGC 1304 >seq19842 Length=2648 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2552 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2493 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2492 TGAGCTATGAAAGC 2479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542659195564000