Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq138762 98.7 6e-16 seq5401 95.1 8e-15 seq6868 91.5 9e-14 seq113513 87.8 1e-12 seq307656 86.0 4e-12 seq84174 82.4 5e-11 >seq138762 Length=915 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/208 (72%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG- 34562 || || ||| |||||| || | ||| || || || || || || |||| || || || Sbjct 687 TGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCGAGCTGC 628 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| ||||| || || | |||||| ||| ||||||| | |||| |||||| |||||| Sbjct 627 TTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGCGGGATGCCCTGCTTGTCCTGGATCTT 568 Query 34623 TTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | |||||| | ||| ||||| ||||||||| |||| || || || || || | Sbjct 567 A-GCCTTAACGTTGTCAATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTGCCCG 509 Query 34682 TTAACGTTTTCACAAAAATCTGCATGTT 34709 | | || ||||| || ||||||||||| Sbjct 508 TCAGGGTCTTCACGAAGATCTGCATGTT 481 >seq5401 Length=4188 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | || | ||||| ||| |||||| || |||||||| |||| Sbjct 4160 GCCGCCGCGAAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGC 4101 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || || || || || | ||||| ||||||||||| Sbjct 4100 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGG 4041 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||| || ||| || | || ||| | || ||||| | ||||| Sbjct 4040 GATGCCCTCCTTATC-CTGAATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCA 3982 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || || || ||||| | || ||||| || |||||||| Sbjct 3981 CCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3933 >seq6868 Length=3892 Score = 91.5 bits (100), Expect = 9e-14 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||| || || || |||||| || ||||| || || | Sbjct 2881 GCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 2940 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| ||||||||||| Sbjct 2941 GAGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 3000 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || |||||||| ||| ||| | || ||| | || ||||| |||||||| Sbjct 3001 AATCCCTTCCTTGTCCTGGAT-TTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCA 3059 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||| || || || || || || | || ||||| || |||||||| || Sbjct 3060 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3111 >seq113513 Length=1062 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| ||||| ||| ||||||||| ||||| || || | || || | Sbjct 1002 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTG 943 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | ||||| |||||||| | | |||||| Sbjct 942 CCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCC 883 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| ||||||||| |||| || Sbjct 882 TTGTCCTGGATC-TTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGT 824 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || || | || ||||| || |||||||| || Sbjct 823 GATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 782 >seq307656 Length=504 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||| || || || || ||| ||||| || ||||| || || || || ||||||| Sbjct 281 CACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCGTCTTC 222 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||||||||||| || || || | ||| || ||||| || || | || || ||||| | Sbjct 221 TAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTGTC-CT 163 Query 34617 GATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || ||||| || || || ||| ||||| ||||||||| | || || |||| Sbjct 162 GAATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCACTTCGAGTGTAATGGTTT 103 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || |||| || || || ||||||||||| Sbjct 102 TGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 >seq84174 Length=1294 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||| | ||| |||||| ||||||||| ||||||||||| | | || ||| Sbjct 131 AGACGCAGCACAAGATGAAGAGTGGACTCCTTTTGGATGTTATAATCCGCCAAGGTACGC 72 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || |||||||| | | ||| || || || || | |||||| Sbjct 71 CCATCCTCCAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCTGGAGGAATACCCTCC 12 Query 34609 TTGTC 34613 ||||| Sbjct 11 TTGTC 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 312174288739940