Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq307656 131 1e-25 seq12510 91.5 1e-13 seq6868 89.7 4e-13 >seq307656 Length=504 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || ||||| | ||||| || |||||||| | || Sbjct 72 ATGCAGATTTTCGTCAAGACTCTAACTGGCAAAACCATTACACTCGAAGTGGAGGCTTCG 131 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||||||| |||||||||||||||||||| || || Sbjct 132 GACACTATTGATAATGTCAAGTCAAAAATTCAGGACAAAGAAGGCATACCACCAGACCAG 191 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||| | |||||| || || | ||| || || Sbjct 192 CAACGTCTCATTTTCGCTGGTAAACAACTAGAAGACGGTCGCACTCTAAGCGACTATAAT 251 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||| | || || || | | ||| |||| || || Sbjct 252 ATCCAAAAAGAGTCTACCCTTCACTTAGTGCTCAGATTGAGGGGAGGTAT 301 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| |||| || || ||||||| ||||| || || |||| Sbjct 300 ATGCAAATCTTTGTCAAGACTTTGACGGGTAAAACTATTACCCTTGAGGTAGAGGCGTCT 359 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || || ||||| ||||| || || || || || Sbjct 360 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGAATTCCGCCAGACCAG 419 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||||||||| || || || ||| | ||| |||||| Sbjct 420 CAGCGTCTCATTTTCGCCGGCAAACAATTAGAGGATGGTCGCACCCTCAGCGACTACAAC 479 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||| || || Sbjct 480 ATCCAGAAGGAATCAAC 496 >seq12510 Length=3164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || |||||||| || | || Sbjct 2875 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACACTTGAAGTCGAGTCCTCT 2934 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || ||||| || |||| || || || || Sbjct 2935 GATACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGTGCATCCCCCCGGACCAG 2994 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | ||| | || | ||| || || || |||| || | ||| | | ||||||||| Sbjct 2995 CGGCGACTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGGCGGATTACAAC 3054 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || ||||| | || |||| |||||||| Sbjct 3055 ATCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGCCTGCGTGGTGGCAT 3104 >seq6868 Length=3892 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| | Sbjct 3108 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGAGCAGC 3049 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||| || ||||| ||||| || || || || || Sbjct 3048 GACACCATCGACAACGTCAAGGCTAAAATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 2989 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| || || |||| ||| | || | |||| |||||| Sbjct 2988 CAGCGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACAAC 2929 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 2928 ATCCAGAAGGAGTCGAC 2912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431390441628740