Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq351396 253 2e-62 seq664408 158 1e-33 seq597246 134 2e-26 seq502285 116 4e-21 seq313974 116 4e-21 seq171123 89.7 6e-13 seq279680 86.0 7e-12 seq10546 84.2 3e-11 >seq351396 Length=451 Score = 253 bits (280), Expect = 2e-62 Identities = 274/363 (75%), Gaps = 0/363 (0%) Strand=Plus/Minus Query 176737 AGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAG 176796 || || || || ||||| ||||| || | ||||||||||| || ||||| |||||| Sbjct 451 AGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAG 392 Query 176797 ACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCT 176856 || || || ||||| ||||| || ||||| ||||| || | |||||||| |||||| | Sbjct 391 ACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 332 Query 176857 TTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGG 176916 ||||| ||||| | | | ||||||||| | || || | || || || | |||||| Sbjct 331 TTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGG 272 Query 176917 TTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 176976 || ||||| | ||| || | || ||||| |||||||| || |||||||| |||||||| Sbjct 271 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 212 Query 176977 TCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCA 177036 ||||| | || | ||| || ||| ||| |||| |||||| | ||||| || Sbjct 211 TCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCT 152 Query 177037 AACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 177096 || |||||||||||||| |||||||| |||||||||||||||||||| || ||||| ||| Sbjct 151 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 92 Query 177097 GCT 177099 ||| Sbjct 91 GCT 89 >seq664408 Length=200 Score = 158 bits (174), Expect = 1e-33 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 176496 TGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGG 176555 |||||||||||| || || || | || || | || |||||| | | || || | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 176556 TCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTT 176615 ||||||| |||||||||||||||||| | || || || |||| |||||||||||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 176616 TGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGG 176675 ||||||||| |||||||||||||| || ||||| |||||||| ||| | || ||||| || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 176676 TGTGTTTGGTGG 176687 ||| || || || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 176269 GGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCA 176328 || ||| |||| ||||||||||| || ||||| || || | | || | || || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 176329 ATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAAT 176388 |||||| | ||||| |||||||| |||||||| ||| | ||||| || ||| | |||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 176389 GGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGA 176448 || || || || | || |||| | |||||| | | ||| | | ||| ||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 176449 CGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCT 176508 || | ||||||||||||| | | | || |||||||||||||| |||||||||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 176509 GC 176510 || Sbjct 3 GC 2 >seq502285 Length=313 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 19346 CCGTGGTCGTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGT 19405 ||| || || || |||| ||| ||||| || ||||| || ||||| || ||||| | || Sbjct 79 CCGGGGGCGAATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGGGT 138 Query 19406 ATGCCCTATCAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGA 19465 ||| || || ||||||| | ||||||||| | || || | | || | |||| | Sbjct 139 ATGTCCGATAGATCTACCCCTTGTGGATTGGAGATTTAAAAAGGATATTAAAAGGAAACA 198 Query 19466 ACTTAGAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTA 19525 | |||||| || || || |||| ||||| || || || || || || ||||| Sbjct 199 GTTGCTTAATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGCAATTGTGTTGAGTA 258 Query 19526 TTGCCCAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 || || ||||||||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 259 CTGTCCGACAAACTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 312 >seq313974 Length=495 Score = 116 bits (128), Expect = 4e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 19368 TTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTATCAATCTACCAGTG 19427 ||||| || ||||| || ||||| || ||||| | ||||| || || ||||||| | Sbjct 2 TTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGGGTATGTCCGATAGATCTACCCCTT 61 Query 19428 GTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAATTATTCGATAGAC 19487 ||||||||| | || || | | |||| |||| || | |||||| || || Sbjct 62 GTGGATTGGAGATTTAAAAAGGATATTAAGAGGAAACAATTGCTTAATTATAGTATTGAT 121 Query 19488 TTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCTATCC 19547 || |||| ||||| || || || || || || ||||| || || ||||||||| |||| Sbjct 122 TTCGGAGTTTGTATATTTTGTGGCAATTGTGTTGAGTAATGTCCGACAAACTGTTTATCA 181 Query 19548 ATGACAGAAGAATATGAATTGGCTACATTTGACAGACATCAA 19589 ||||| |||||||||||| | |||| | ||| || ||| || Sbjct 182 ATGACTGAAGAATATGAACTTTCTACTTATGATAGTCATGAA 223 >seq171123 Length=784 Score = 89.7 bits (98), Expect = 6e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 176949 CAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACA-ACTCT-GGTAAAGTGATT 177006 |||||| || |||||| | || ||||| ||||| | || | | || || || ||| Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 177007 CCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGT 177066 ||| || | |||||| | |||||||| || ||||||||||||| |||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 177067 AATGCTCACAACTTCCCACTTGA 177089 ||||||||||||||||| || || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 >seq279680 Length=543 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 177001 GTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCAC 177060 || ||| ||| || | |||||| | |||||||| || ||||||||||||| |||||| Sbjct 515 GTTATTAATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCAC 456 Query 177061 GAGCGTAATGCTCACAACTTCCCACTTGACCT 177092 | || ||||||||||||||||| || ||||| Sbjct 455 AAACGAAATGCTCACAACTTCCCTCTAGACCT 424 >seq10546 Length=3372 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 19346 CCGTGGTCGTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGT 19405 ||| || || || |||| ||| ||||| || ||||| || ||||| || ||||| | || Sbjct 3350 CCGGGGGCGAATCCACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGGGT 3291 Query 19406 ATGCCCTATCAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGA 19465 ||| || || ||||||| | ||||||||| | || || | | || | |||| | Sbjct 3290 ATGTCCGATAGATCTACCCCTTGTGGATTGGAGATTTAAAAAGGATATTAAAAGGAAACA 3231 Query 19466 ACTTAGAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTA 19525 | |||||| || || || |||| ||||| || | || || || || ||||| Sbjct 3230 GTTGCTTAATTATAGTATTGATTTCGGAGTTTGTATATTTTTTGGCAATTGTGTTGAGTA 3171 Query 19526 TTGCCCAACAAACTGT 19541 || |||||||||||| Sbjct 3170 CTGTCCAACAAACTGT 3155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 598468951257600