Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq214076 93.3 1e-14 seq586613 89.7 2e-13 >seq214076 Length=664 Score = 93.3 bits (102), Expect = 1e-14 Identities = 132/184 (72%), Gaps = 10/184 (5%) Strand=Plus/Minus Query 14566 TGATCCAGGGCTTCATCAACGGCATCAAGAACATGTTCGGCTCGGTGAAGGACACCCTCG 14625 |||||| ||| ||||||||||||||||| ||||||||| ||||| ||| ||||| | Sbjct 618 TGATCCGTGGCCTCATCAACGGCATCAAGTCCATGTTCGGATCGGTCAAGTCGACCCTGG 559 Query 14626 GTGGCCTGACCGACAAGCTCACCTCCTGGAAGGGTCCGGAGTCCCT-GGACCGTGTCC-- 14682 | || |||||| ||||| | ||||||||||| || |||| ||| | || Sbjct 558 GCGGGCTGACCTCGAAGCTGTCGTCCTGGAAGGGCCC-----CCCTGGGAAGGACGCCAC 504 Query 14683 --TGCTGGTCGACGCCGGTCGACTGGTCATCGGCGGCTTCATCAAGGGTCTGGAGTCTCG 14740 | ||| ||| |||| | ||||| ||| ||| |||||| ||| || ||||| || Sbjct 503 GATCCTGAAGGACTCCGGCCAGCTGGTGATCAACGGATTCATCGCGGGCCTTGAGTCCCG 444 Query 14741 CTAC 14744 |||| Sbjct 443 CTAC 440 >seq586613 Length=250 Score = 89.7 bits (98), Expect = 2e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 40037 GGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAG 40096 ||| | | |||||||||| || |||| || | | |||||||| | | |||||| Sbjct 186 GGCATTTGCAGCACGCGGCCCACGTCGCGCAGCACCGCGCGCGCCTGCAGCTTACCGAAG 127 Query 40097 GTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCG 40156 || |||||| ||||| |||| ||||| |||| |||||| | ||| || ||| Sbjct 126 GTGATGATCTGCGCGACGCGCTCGGTGCCGTATTTCTGCTGGACGTAACTGATCACTTCG 67 Query 40157 CCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGT 40214 ||||| || || | || ||| |||| ||| | ||| |||||| ||||||||||| | Sbjct 66 CCGCGGCGGTCCTGGCA--GAAATCGACGTCGAAGTCCGGCATGCTGACGCGCTCGGGAT 9 Query 40215 TCAGGAA 40221 ||||||| Sbjct 8 TCAGGAA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159137443015320