Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq214076 111 5e-20 >seq214076 Length=664 Score = 111 bits (122), Expect = 5e-20 Identities = 162/227 (71%), Gaps = 19/227 (8%) Strand=Plus/Minus Query 14750 CTGCTGAGCGCGGGCAAGAAGCTGATCCAGGGCTTCATCAACGGTGTCAAGAACATGTTC 14809 |||||||| || || ||| |||||| ||| |||||||||| ||||| ||||||| Sbjct 640 CTGCTGAGTGCCGGTAAGGCCGTGATCCGTGGCCTCATCAACGGCATCAAGTCCATGTTC 581 Query 14810 GGCTCCGTGAAGTCCACCCTCGGCGACCTCACCTCGAAGCTGACGAGCTGGAAGGGTCCG 14869 || || || ||||| ||||| |||| || |||||||||||| || ||||||||| || Sbjct 580 GGATCGGTCAAGTCGACCCTGGGCGGGCTGACCTCGAAGCTGTCGTCCTGGAAGGGCCC- 522 Query 14870 GAGTCCCTGG-------ACCGCG-TCCTGCTGGTTGGTGCCGGTGAGCTGGTCATCAACG 14921 |||||| || || ||||| | | |||| ||||||| ||||||| Sbjct 521 ----CCCTGGGAAGGACGCCACGATCCTGAAG---GACTCCGGCCAGCTGGTGATCAACG 469 Query 14922 GCTTCATCAACGGTCTGGAGTCGCGCTACGACGCGGTCCGCAAGTCC 14968 | |||||| || || ||||| |||||| ||||| ||||||| Sbjct 468 GATTCATCGCGGGCCTTGAGTCCCGCTACCCGGCGGT---CAAGTCC 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158972359387000