Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq25202 89.7 5e-13 seq63871 84.2 2e-11 >seq25202 Length=2393 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 6603 GAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGA 6662 |||| ||| || ||| ||||| ||||| |||| || |||| || |||||||||| Sbjct 1609 GAACATACCACA-GACTTGAGCAATCATACACGTCAGAAGAGAATATGATGCAATGTTGA 1667 Query 6663 ACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCAT 6722 | || || || | ||||||||| | || |||||||| | |||||| | |||||||||| Sbjct 1668 AAGGAACACCAAGTCCCATGTCTGCAGAGCGTTGATACATCTGGCATAATAGCTCCCCAT 1727 Query 6723 TCGCGACGTAGAATTGGCAGA 6743 || | || || || ||| ||| Sbjct 1728 TCTCAACATAAAACTGGAAGA 1748 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 34602 TCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAG 34661 ||| ||| || || || | |||||||||||| | |||||| | |||||||| || | || Sbjct 1748 TCTTCCAGTTTTATGTTGAGAATGGGGAGCTATTATGCCAGATGTATCAACGCTCTGCAG 1689 Query 34662 ACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCG 34721 ||||||| | || || || ||||||||||| || |||| || |||| ||||| | Sbjct 1688 ACATGGGACTTGGTGTTCCTTTCAACATTGCATCATATTCTCTTCTGACGTGTATGATTG 1629 Query 34722 CTCATGTCGTGGGGTTGGTTC 34742 |||| ||| || ||| |||| Sbjct 1628 CTCAAGTC-TGTGGTATGTTC 1609 >seq63871 Length=1518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 6603 GAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGA 6662 |||| ||| || ||| ||||| |||||| | || || |||| || |||||||||| Sbjct 745 GAACATACCACA-GACTTGAGCAATCATGCATGTCAGAAGAGAATATGATGCAATGTTGA 803 Query 6663 ACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCAT 6722 | || || || | ||||||||| | || |||||||| | |||||| | |||||||||| Sbjct 804 AAGGAACACCAAGTCCCATGTCTGCAGAGCGTTGATACATCTGGCATAATAGCTCCCCAT 863 Query 6723 TCGCGACGTAGAATTG 6738 || | || || || || Sbjct 864 TCTCAACATAAAACTG 879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || || || || | |||||||||||| | |||||| | |||||||| || | ||||||| Sbjct 879 CAGTTTTATGTTGAGAATGGGGAGCTATTATGCCAGATGTATCAACGCTCTGCAGACATG 820 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || | || || || ||||||||||| || |||| || || | |||||| ||||| Sbjct 819 GGACTTGGTGTTCCTTTCAACATTGCATCATATTCTCTTCTGACATGCATGATTGCTCAA 760 Query 34727 GTCGTGGGGTTGGTTC 34742 ||| || ||| |||| Sbjct 759 GTC-TGTGGTATGTTC 745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444529606929600