Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq113513 102 7e-17 seq6868 102 7e-17 seq385372 89.7 4e-13 >seq113513 Length=1062 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| ||||| || || || || || || || | | Sbjct 1000 GCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCTGCC 941 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || || ||||||||||| | | | || ||| || Sbjct 940 ATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTT 881 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || |||| ||| | | | || ||||| |||||| |||| ||||| Sbjct 880 GTCCTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGA 822 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 821 TGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 782 >seq6868 Length=3892 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || || ||||| || || || | Sbjct 2893 GCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCC 2952 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || || || || || || ||||||||||| | || | | || || Sbjct 2953 GTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTT 3012 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| |||||| |||| ||| | | | || ||||| |||||| |||| ||||| Sbjct 3013 GTCCTGGATTTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGA 3071 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 3072 TGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3111 >seq385372 Length=416 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| || | || ||| | ||| | ||||||||| ||| || || | || || ||||| Sbjct 210 GCCCCCGCGTAGGCGGAGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGC 151 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || | |||| || ||||| ||||| || || || || ||||||||||||| || Sbjct 150 GAGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGG 91 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCA 39235 | || ||| || ||| ||| || |||| ||| | | | || ||||| ||||| Sbjct 90 GATGCCCTCCTTATCCTGGATCTTTGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCA 32 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGT 39266 | |||| |||||| | || |||||||| || Sbjct 31 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426058089742340