Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq586613 89.7 2e-13 seq214076 86.0 2e-12 >seq586613 Length=250 Score = 89.7 bits (98), Expect = 2e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 40029 GGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGACCGAAG 40088 ||| | | ||||||||| || |||| || | | |||||||| | | ||||||| Sbjct 186 GGCATTTGCAGCACGCGGCCCACGTCGCGCAGCACCGCGCGCGCCTGCAGCTTACCGAAG 127 Query 40089 GTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCACGTCG 40148 || |||||| ||||| || | ||||| |||| |||||| |||||||| ||| Sbjct 126 GTGATGATCTGCGCGACGCGCTCGGTGCCGTATTTCTGCTGGACGTAACTGATCACTTCG 67 Query 40149 CCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGT 40206 || || || || | || ||| |||| ||| | ||| |||||| ||||||||||| | Sbjct 66 CCGCGGCGGTCCTGGCA--GAAATCGACGTCGAAGTCCGGCATGCTGACGCGCTCGGGAT 9 Query 40207 TCAGGAA 40213 ||||||| Sbjct 8 TCAGGAA 2 >seq214076 Length=664 Score = 86.0 bits (94), Expect = 2e-12 Identities = 141/201 (70%), Gaps = 13/201 (6%) Strand=Plus/Minus Query 14744 TGATCCAGGGCTTCATCAACGGGATCAAGAACATGTTCGGTTCCGTGAAGGACACCCTCG 14803 |||||| ||| |||||||||| |||||| ||||||||| || || ||| ||||| | Sbjct 618 TGATCCGTGGCCTCATCAACGGCATCAAGTCCATGTTCGGATCGGTCAAGTCGACCCTGG 559 Query 14804 GCAGCCTGACCGACAAGCTGACCTCCTGGAAGGGTCCGGAGTCCCT-GGACCGTGTCC-- 14860 || | |||||| |||||| | ||||||||||| || |||| ||| | || Sbjct 558 GCGGGCTGACCTCGAAGCTGTCGTCCTGGAAGGGCCC-----CCCTGGGAAGGACGCCAC 504 Query 14861 --TCCTGGTCGACGCCGGTCGACTCGTCATCGGCGGCTTCATCAAGGGTCTGGAGTCTCG 14918 ||||| ||| |||| | || || ||| ||| |||||| ||| || ||||| || Sbjct 503 GATCCTGAAGGACTCCGGCCAGCTGGTGATCAACGGATTCATCGCGGGCCTTGAGTCCCG 444 Query 14919 GTACGCCGAGGTTCGCAAGTC 14939 ||| | | ||| |||||| Sbjct 443 CTACCCGGCGGT---CAAGTC 426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158873944147040