Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031099.1 Length=44536 Score E Sequences producing significant alignments: (Bits) Value seq250615 105 2e-18 >seq250615 Length=590 Score = 105 bits (116), Expect = 2e-18 Identities = 194/276 (70%), Gaps = 14/276 (5%) Strand=Plus/Plus Query 4048 ATCTATGACGAGATCGATCCGTTCTGGGGCGTCGCCGCCGCGGAGCTGGTCCGCGAGCTC 4107 ||||| |||||||||| ||||| || ||| |||| || || | ||| ||||| Sbjct 314 ATCTACGACGAGATCGG---GTTCTTCGGAGTCACCGCTGCCGACTTCGTCAAGGAGCTG 370 Query 4108 G-CGCGGATCGACGCCGACCGCGAGCTGAAGGTGCGCATCAACTCGCCCGGCGGTGACGT 4166 | ||||| || |||||| | | | |||| | || |||||||| || ||||| ||||| Sbjct 371 GGCGCGG-TCAACGCCG-CGTCCA--TGAACATCCGGATCAACTCCCCGGGCGGGGACGT 426 Query 4167 CTACGAGGGCATCGCGATCCTCAACGCGCTCCGCGGCCGCGACGGCAAAGTCACCACCGT 4226 | ||| |||||||||||||| ||||| || |||| | | |||| || || || || Sbjct 427 TTTCGACGGCATCGCGATCCTGAACGCCCTGCGCGCGCAC-CCGGCCAA--CAAGACGGT 483 Query 4227 ---CGTCGACGGCCTCGCTGCGTCGATTGCCAGCGTCATTGCGATGGCCGGATCCGAGAT 4283 ||| ||||||||||| |||||| || | |||| || |||||||| | || Sbjct 484 GACCGTGGACGGCCTCGCCGCGTCGGCCGCATCCTTCATCGCCATGGCCGGTGATGCCAT 543 Query 4284 CGTCATGATGCCGAACTCGGAGATGATGATTCACGA 4319 || ||| || | ||| ||||||||| ||||| Sbjct 544 CGAGATGGCCCCCCAGTCGATGATGATGATCCACGA 579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141267140249680