Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031118.1 Length=54167 Score E Sequences producing significant alignments: (Bits) Value seq250615 100 1e-16 >seq250615 Length=590 Score = 100 bits (110), Expect = 1e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 3559 GACTTCGTGCGCGACCTCGACGCGATCGACGCCTCGAACATCCTGGTGCGGATCAACTCT 3618 |||||||| || || | |||| || ||||| || ||| | ||||||||||| Sbjct 353 GACTTCGTCAAGGAGCTGGGCGCGGTCAACGCCGCGTCCATGAACATCCGGATCAACTCC 412 Query 3619 CCCGGCGGCGACGTCTACGACGCGATCGCCATCACCAACGCGCTGCGCAACCACGACGCG 3678 || ||||| ||||| | ||||| ||||| ||| ||||| |||||| ||| || Sbjct 413 CCGGGCGGGGACGTTTTCGACGGCATCGCGATCCTGAACGCCCTGCGCGCGCACCCGGCC 472 Query 3679 ACGATCACCGTCCAGGTCGACGGTCTCGCCGCGTCGGCGGCCAGCTTCATCGCGATGGCC 3738 | | || || || ||||| |||||||||||||| || ||||||||| |||||| Sbjct 473 AACAAGACGGTGACCGTGGACGGCCTCGCCGCGTCGGCCGCATCCTTCATCGCCATGGCC 532 Query 3739 GGCGACGAGGTGGTGATGTGCCGCAACACCGAGATGATGATCCATGACGC 3788 || || | | | |||| || | | | |||||||||||| ||||| Sbjct 533 GGTGATGCCATCGAGATGGCCCCCCAGTCGATGATGATGATCCACGACGC 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171842533025640