Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq559477 120 1e-22 seq247333 84.2 8e-12 >seq559477 Length=268 Score = 120 bits (132), Expect = 1e-22 Identities = 139/185 (75%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 4901 CGTAATGACATTCTAGCTAAGCGTTTTGGTATTCCCATGGAAGGTCTAACATACTTCTTC 4960 ||||| || || || || ||||||||||| || |||||||||||||| || ||||||||| Sbjct 267 CGTAACGAGATCCTGGCAAAGCGTTTTGGGATCCCCATGGAAGGTCTCACGTACTTCTTC 208 Query 4961 ACGTATGACGAGATCCAACCACAGACTCCACGTCGATCACATGCATTCTCAAAAATGCCT 5020 ||||| || |||| | | | || ||| || || || | |||| | |||||| Sbjct 207 ACGTACGAAGAGACCGAGCTTCACGATCCGCG--GACGACCAAC-TTCTGGAGAATGCCC 151 Query 5021 TGCGCTATGGGCGCTGACCTTTCTCAAGGTGATGACTTCTGCGCATTTACATTCCTGTTT 5080 |||||| | || || ||||| ||| |||||| |||||||| || || || ||||| || Sbjct 150 TGCGCTCTTGGGGCGGACCTCTCTAGAGGTGACGACTTCTGTGCGTTCACGTTCCTCTTC 91 Query 5081 CCTCT 5085 ||||| Sbjct 90 CCTCT 86 >seq247333 Length=596 Score = 84.2 bits (92), Expect = 8e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 9042 CCCTTCTCCCGCATCAAGTCCACTGCTGTGGATCTCACGGCTGATGAGGCTCGTGCTAAG 9101 || ||| ||||| ||||||| || | ||||| || | || ||||| || || ||| Sbjct 596 CCGTTCGCCCGCGTCAAGTCGTTCGCGGCCGATCTGACCGAGGACGAGGCCCGCGCGAAG 537 Query 9102 GGTTACGTTAAGGGTAACCTGAAGAAGGAAGAAATCATCAAGCTCCTGAAGCGTGTTACC 9161 |||||| | ||||| | | ||||||| | || || || ||| || || | ||| Sbjct 536 GGTTACCTCAAGGGCACCAAGAAGAAGAACGAGGTCTTCTCGCTGCTCCGCCGGATCACC 477 Query 9162 ACGCCGACGACCATCTACAAGAAGCAGAAGCTGGACCGCGATGA 9205 ||||| || ||||||||||||||| |||||||||||| || Sbjct 476 CAGCCGAAGATGATCTACAAGAAGCAGGCGCTGGACCGCGAGGA 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188592171929800