Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq351396 316 3e-81 seq162061 188 9e-43 seq597246 152 6e-32 seq664408 140 4e-28 seq217498 114 2e-20 seq623740 96.9 4e-15 seq472319 96.9 4e-15 seq466979 96.9 4e-15 seq63256 93.3 5e-14 seq171123 91.5 2e-13 >seq351396 Length=451 Score = 316 bits (350), Expect = 3e-81 Identities = 268/330 (81%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 |||||||| || |||||||| |||||||| || || ||||| ||||||||||| || ||| Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 || || | |||||||| |||||| || ||||| ||||||||| | ||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032 ||||||||||| || || || |||||||| |||||| | ||| |||| |||||||| || Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||||| |||||||| || |||||||| || | ||||| |||||||||| || | || Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 || ||||| || | ||||||| ||| |||||| |||||||| |||||||| |||||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||||||||||||||||| ||||| |||||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 188 bits (208), Expect = 9e-43 Identities = 245/336 (73%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 186264 CTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCT 186322 |||||||| || ||||| || |||||||||||| | || || |||||| | ||| ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 186323 CGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAG 186382 | | | || || || ||||| || | || |||||||| ||||| || |||||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 186383 TGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGT 186442 ||||||||| || || || || || || || |||||||| || || ||||| || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 186443 CGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCC 186502 |||||||| ||| ||||| | | ||| |||||||||| || || ||||||||||| || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 186503 ATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGG 186562 ||| || |||||||| || || || | | || | |||||||| | || || ||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 186563 TGTTACTGTAGAAAATACTCTTTATGAAGATGGCGA 186598 | || |||||||| ||||| | ||| || || || Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq597246 Length=243 Score = 152 bits (168), Expect = 6e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 183364 TATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCAC 183423 ||||||||||| || ||||||||||| || ||||| |||| || || ||| | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 183424 TTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTAC 183483 || || || || |||||||| ||||| | ||||||||| | || || ||||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 183484 CAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAA 183543 | || | || | |||||| | |||| || || || |||||||||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 183544 TTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTA 183587 | || |||| | ||||||||||||||||| |||||| || Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATA 8 >seq664408 Length=200 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 183579 TGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGG 183638 |||||| || || |||||||| ||||| || ||||| ||| || | || ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 183639 TCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCT 183698 |||||| || |||||||||||| | || || ||| | || |||| |||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 183699 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGG 183758 ||| ||||| ||||||||||||||||| ||||| || ||||||||| | ||||| ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 183759 TGTCTTCGGTGG 183770 ||| ||||| || Sbjct 13 TGTATTCGGCGG 2 >seq217498 Length=656 Score = 114 bits (126), Expect = 2e-20 Identities = 154/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | ||||| || |||||| | ||||| || || | || ||||| || | Sbjct 320 CTTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 379 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || ||| | ||| | ||||| |||| || || | |||||| ||||||| | Sbjct 380 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 438 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || || || ||| |||| || | | |||||||||| Sbjct 439 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 498 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCC 183405 | || |||||||||| || ||||| ||||| Sbjct 499 ATATTCTCTCTGGTGCTATTATTCCTACTTCC 530 >seq623740 Length=225 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/189 (72%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 186339 TACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTT--GTTAGTGTATTCCTCATCT 186396 || |||||||| | || ||| ||| ||||| || ||| ||| ||||||||| || | Sbjct 189 TATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATTT 131 Query 186397 ACCCTCTTGGACAGTCC---TCA--TGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAAT 186451 | || || || | | || |||||||| || || ||||| || |||||||| Sbjct 130 ATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAAT 71 Query 186452 CTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACAT 186511 ||| ||||| | | ||| |||||||||| || || ||||||||||| ||||| || || Sbjct 70 ATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 11 Query 186512 GATGGGTGT 186520 |||||| || Sbjct 10 GATGGGAGT 2 >seq472319 Length=337 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 183858 CAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCG 183917 ||| || |||||||| ||||||| || || ||||| ||||||||||| || ||||| | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 183918 TCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTT 183968 | |||||||| |||||| || ||||| ||||||||| | |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq466979 Length=342 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| ||||||||||| ||| | || ||||| || ||||| Sbjct 225 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTT 166 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTT 186737 || |||| ||| |||||| |||||| | |||||||| ||||| ||| Sbjct 165 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq63256 Length=1526 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 186189 CTACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTC 186248 ||||| ||||| || || | ||||||||| | | ||||||| || | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 186249 TGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTT 186308 |||| ||||| || |||||||| || ||||| || |||||||||||| | || || ||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 186309 GAAATCAGTC-GTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTAT 186367 ||| | || |||| || | || || || ||||| || | || |||| ||| || Sbjct 141 GAACTTGCTCGGTCT-GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCAAT 199 Query 186368 CGCTGTCTTTGTT 186380 ||| || |||||| Sbjct 200 CGCGGTTTTTGTT 212 >seq171123 Length=784 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATG--GTCAAGGTCGTGTCCTGA 184090 ||||| |||||||| | || ||||| || | ||||| ||||||| || || | | Sbjct 643 AACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATTA 702 Query 184091 ACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTA 184150 | || || | || | ||||||||||| | |||| |||||||| |||||| | || | Sbjct 703 ATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGAA 762 Query 184151 ATGCTCACAACTTCCCTCTCGA 184172 ||||||||||||||||||| || Sbjct 763 ATGCTCACAACTTCCCTCTAGA 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616890264261600