Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq351396 280 2e-70 seq162061 221 1e-52 seq597246 168 7e-37 seq664408 147 2e-30 seq217498 123 3e-23 seq63256 120 3e-22 seq466979 105 7e-18 seq41969 104 3e-17 seq634786 96.9 4e-15 >seq351396 Length=451 Score = 280 bits (310), Expect = 2e-70 Identities = 278/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 164555 GAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACC 164614 || || || |||||||| || || | |||||||| |||||||| || ||||| || Sbjct 448 GAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACT 389 Query 164615 TACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTC 164674 || || || || || ||||| ||||| ||||| || | || |||||||| ||| ||| Sbjct 388 TATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTC 329 Query 164675 AACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTT 164734 |||||||| ||||| | ||||||||| | || || |||||||| || || |||||||| Sbjct 328 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTC 269 Query 164735 ACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 164794 |||||| | || |||| || ||||| |||||||| || |||||||| |||||||| || Sbjct 268 ACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 209 Query 164795 ATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGT 164854 | | ||| |||| ||||| || | || || ||||| || | ||||||| ||| | Sbjct 208 GTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGAGCTAAT 149 Query 164855 CTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 164914 || || |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 148 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 221 bits (244), Expect = 1e-52 Identities = 252/336 (75%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 165456 CTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CT 165514 |||||||| || |||||||| |||||||||||| | ||||| |||||||| || || || Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 165515 TATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAG 165574 || | | || ||||| ||||| || | ||||||||||| || || || || ||| Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 165575 TGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGT 165634 ||| || ||||| ||||| ||||| ||||| |||||||| || ||| || || || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 165635 CGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCC 165694 |||||||| || |||||| | || ||| ||||||| || ||||| |||||| |||| || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 165695 CTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGG 165754 ||||| |||||||| || || || | ||||||| || |||| | || |||||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 165755 TGTTACAGTAGAGAATACTTTGTATGAAGATGGTGA 165790 | || ||||| || ||| | | ||| || ||||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq597246 Length=243 Score = 168 bits (186), Expect = 7e-37 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 164096 TATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCAC 164155 ||||||||||| || |||||||||||| |||| ||| |||| || ||||| ||||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 164156 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 164215 || ||||| || |||||||| ||| | | || || ||| | ||||| |||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 164216 CAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAA 164275 | || |||| | |||||| | |||| | | ||| |||||||||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 164276 CTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCT 164326 ||| || |||| | |||||||||||||||||| || |||||||| ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq664408 Length=200 Score = 147 bits (162), Expect = 2e-30 Identities = 151/196 (77%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 164308 TTGC-GTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTT 164366 |||| || |||||||| |||||||| || || || | ||| || ||| || | || ||| Sbjct 197 TTGCTGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTA 138 Query 164367 TCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACA 164426 | |||||||| |||||||||| |||||| | || || ||||| | ||||||| | Sbjct 137 TTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTA 78 Query 164427 TGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAG 164486 || | || |||||||| |||||||||||||| ||||| || ||||| ||| | || |||| Sbjct 77 TGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAG 18 Query 164487 CAGGTGTGTTTGGCGG 164502 | ||||| || ||||| Sbjct 17 CTGGTGTATTCGGCGG 2 >seq217498 Length=656 Score = 123 bits (136), Expect = 3e-23 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| |||||| ||||| || || || ||| | || |||| |||||||| || || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| | | | | | || ||| | ||| || || ||||||||||||| ||| | Sbjct 381 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCC 438 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || || || || ||||||| | | |||||||||| Sbjct 439 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 498 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTC 164136 | || ||||||||||| |||| ||| |||| Sbjct 499 ATATTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq63256 Length=1526 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 165379 TGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGAC 165438 |||| |||||||| || || | ||||| || || | |||||||| || | || || Sbjct 19 TGCTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTT 78 Query 165439 TCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGT 165498 | ||||| ||||| || |||||||| || |||||||| |||||||||||| | ||||| | Sbjct 79 TATGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAAT 138 Query 165499 TTGAACTGGCAC-GACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCT 165557 ||||||| || | | || || | | || ||||| ||||| || | ||||||| ||| Sbjct 139 TTGAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGATCCA 197 Query 165558 ATTGCTGTATTCGTT 165572 || || || || ||| Sbjct 198 ATCGCGGTTTTTGTT 212 >seq466979 Length=342 Score = 105 bits (116), Expect = 7e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 ||||| | || ||||||||||| ||||||||||||||| | || ||||| || || ||| Sbjct 225 ACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATCTTT 166 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTT 165929 ||| ||||||| |||||| |||||| | || ||||||||||| ||| Sbjct 165 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq41969 Length=1890 Score = 104 bits (114), Expect = 3e-17 Identities = 157/222 (71%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 165948 TGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTG 166007 |||| ||| ||||||| | | || || || || || | ||||| ||||||||||| Sbjct 576 TGGATGAGTGCTATTGGCGTAGTAGGCCTGGCTCTGAACTTACGTGCCTATGATTTTGTT 517 Query 166008 TCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATC 166067 || ||||| || | || || || |||| || ||||| || ||||| || ||||| || Sbjct 516 TCCCAGGA-ATCCGTGCAGCGGAAGATCGTGAATTTGAGACTTTCTACACCAAAAATATT 458 Query 166068 CTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTT 166127 || | || || || | ||||| ||| |||| || || || |||||||| || || Sbjct 457 CTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTT 398 Query 166128 GTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | |||||||| || || | ||| | || ||||| |||||| Sbjct 397 ATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 356 >seq634786 Length=218 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | ||| ||||||||||||||||| || |||||||| || | || ||| Sbjct 143 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 84 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||||||| | ||| | ||||||||| |||| ||||| ||||| || || |||| Sbjct 83 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 24 Query 165285 TAT 165287 ||| Sbjct 23 TAT 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553010672397600