Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031269.1 Length=51884 Score E Sequences producing significant alignments: (Bits) Value seq250615 87.8 6e-13 >seq250615 Length=590 Score = 87.8 bits (96), Expect = 6e-13 Identities = 171/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 3391 GGTTCGGCGGCGTCAGCGCCCGTGACTTCGTCGAGGATCTCGCGACCGTCGACACCGACA 3450 ||||| ||| |||| ||| ||||||||| |||| || | | ||| || ||| Sbjct 330 GGTTCTTCGGAGTCACCGCTGCCGACTTCGTCAAGGAGCTGGGCGCGGTCAACGCCGCGT 389 Query 3451 ACATCCTGGTGCGCATCAACTCGCCCGGCGGCGACGTGTACGACGCGCTGGCCATCACCA 3510 ||| | || |||||||| || ||||| ||||| | ||||| | || ||| | Sbjct 390 CCATGAACATCCGGATCAACTCCCCGGGCGGGGACGTTTTCGACGGCATCGCGATCCTGA 449 Query 3511 ACGCGCTGCGCAATCACGACGCGACGGTGACGGTGCAGGTCGACAGCCTCGCCGCCAGCG 3570 |||| |||||| ||| || | ||||||| || ||| |||||||||| | Sbjct 450 ACGCCCTGCGCGCGCACCCGGCCAACAAGACGGTGACCGTGGACGGCCTCGCCGCGTCGG 509 Query 3571 CAGCCAGCTTCATCGCGATGGCCGGCGACGAGGTCGTGATGTGCCGCAACTCCGAGCTGA 3630 | || ||||||||| |||||||| || | ||| |||| || | | || | ||| Sbjct 510 CCGCATCCTTCATCGCCATGGCCGGTGATGCCATCGAGATGGCCCCCCAGTCGATGATGA 569 Query 3631 TGATCCACGACGC 3643 ||||||||||||| Sbjct 570 TGATCCACGACGC 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164594726805360