Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq307656 143 6e-29 seq6868 140 7e-28 seq113513 122 2e-22 seq12734 114 3e-20 seq5401 114 3e-20 seq12510 113 1e-19 seq17435 100 7e-16 seq138762 98.7 2e-15 seq66478 98.7 2e-15 seq84174 95.1 3e-14 seq83756 91.5 3e-13 seq385372 86.0 1e-11 >seq307656 Length=504 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | |||||| || | ||||| ||||||||||||||||| || || ||| || ||| Sbjct 293 CCTCAATCTGAGCACTAAGTGAAGGGTAGACTCTTTTTGGATATTATAGTCGCTTAGAGT 234 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | || |||||||| ||| || ||||| || || | |||||||| | | || || Sbjct 233 GCGACCGTCTTCTAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGTGGTATGCC 174 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || || ||||||||| |||||| | || | |||| ||| ||| ||||| || Sbjct 173 TTCTTTGTCCTGAATTTTTGACTTGACATTATCAATAGTGTCCGAAGCCTCCACTTCGAG 114 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| || |||||||| ||||| | |||||| Sbjct 113 TGTAATGGTTTTGCCAGTTAGAGTCTTGACGAAAATCTGCAT 72 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| || || || ||||||||||| ||| | || | ||||| |||| | Sbjct 502 TGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGT 443 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||| || || | ||||||||| | || ||||||||||| || || || || Sbjct 442 TTGCCGGCGAAAATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTTC 383 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| ||| | || | | |||| || |||||| ||||| ||||||||||| ||||| Sbjct 382 GATTTCACATTGTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTC 323 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | |||||| || |||| ||||| Sbjct 322 AAAGTCTTGACAAAGATTTGCAT 300 >seq6868 Length=3892 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || || || ||||| || ||||||||||| ||||| | || | Sbjct 2890 GAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCG 2949 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || |||||||||||||| |||| ||||||||||| || || ||||| Sbjct 2950 GCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTC 3009 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || ||||| ||||| | || | | |||| ||||| || || || || Sbjct 3010 CTTGTCCTGGATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGT 3069 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || |||||||| || ||||||||||||| |||||| || Sbjct 3070 GATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3111 >seq113513 Length=1062 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || || || ||||| |||||||||||||| || || | || || Sbjct 1003 GAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAGGGTCCT 944 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || ||||| || | ||||||||||| | ||| || || Sbjct 943 GCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTC 884 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||||| || || || || Sbjct 883 CTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGT 824 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || |||||||| || ||||||||||||| |||||| || Sbjct 823 GATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 782 >seq12734 Length=3143 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 |||||||||||| | |||| ||||||||||| || |||||||||||| || || || ||| Sbjct 3135 TTCCCGGCGAAGTTGAGCCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTT 3076 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| | || | | |||| ||||| || || || || || || |||||||| Sbjct 3075 GCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTGCCCGTC 3016 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||||| |||||| Sbjct 3015 AGGGTCTTGACGAAGATCTGCAT 2993 >seq5401 Length=4188 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || |||||||| || || || | || | ||||| Sbjct 4145 GAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATC 4086 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| || | ||||||||||| || ||| || ||||| || Sbjct 4085 CTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATC 4026 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||| | || | | |||| || ||| || || | || || || Sbjct 4025 CTGAATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGT 3966 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 3965 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3933 >seq12510 Length=3164 Score = 113 bits (124), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || |||||||||||||| || | || | ||||| Sbjct 3087 GAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATC 3028 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || |||||||| || | | ||||||||| | ||| | ||||| Sbjct 3027 CTCCAGCTGCTTT--CCAGCGAAGATCAGTCGCCGCTGGTCCGGGGGGATGCACTCCTTG 2970 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || || ||| | || | | | || || ||| |||||||| || || Sbjct 2969 TCCTGGATCTTCGCCTTCACATTGTCGATGGTATCAGAGGACTCGACTTCAAGTGTGATG 2910 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| |||||||| |||| |||||| Sbjct 2909 GTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 2875 >seq17435 Length=2785 Score = 100 bits (110), Expect = 7e-16 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| || || || | ||| ||||| |||||||| |||||||||||||| || || || Sbjct 1835 CCTGAGCCTCAGCACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAATGT 1776 Query 151943 TCTCCCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | ||||||||| | ||||| || || || || ||||| |||||||| | | ||| Sbjct 1775 GCGCCCATCTTCCAACTGCTTT--CCAGCAAAAATTAGCCTTTGCTGGTCTGGGGGGATG 1718 Query 152001 CCTTCCTTTTCTTGAA 152016 |||||||| || |||| Sbjct 1717 CCTTCCTTGTCCTGAA 1702 >seq138762 Length=915 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || || | |||||| || | | || | || || Sbjct 697 GAGCACGAGGTGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAGAGAGGGTGCGGCCGTC 638 Query 151952 TTCTAGGCT--TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || || ||||||||||||||| || | ||||||| ||| || ||| || | ||| Sbjct 637 CTCGAG-CTGCTTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGCGGGATGCCCTGCTTG 579 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || || || | || | | |||| ||||| || || || || || Sbjct 578 TCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCGCTGCTCTCCACCTCCAGCGTGATG 519 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| || ||||||||||||| |||||| || Sbjct 518 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 481 >seq66478 Length=1484 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| |||||||| || ||||||| ||| || || || || |||| Sbjct 570 AGAACAAGATGAAGGGTAGACTCCTTGTGGATGTCGTAGTCCGCCAAGGTGTGGCCATTC 629 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || || | ||||||||| | |||||| ||| | || Sbjct 630 TCCAGCTGCTTGCCAGCAAATATGAGGCGCTGCTGGTCTGGAAGGATTCCCTCCCTGTCA 689 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||| | | | || | | ||||||||| || |||||||| || || Sbjct 690 TGAATCTTAGCCTTGATATTGTGTATAGTATATGAACTCTCGACGTCAAGAGTGATGGTC 749 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| |||| || || | ||| || Sbjct 750 TTGCCGGTGAGGATCTTGACAAAAATCTGTAT 781 >seq84174 Length=1294 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||||||||| ||||| ||||||||||| ||||| || || || | |||||| Sbjct 125 AGCACAAGATGAAGAGTGGACTCCTTTTGGATGTTATAATCCGCCAAGGTACGCCCATCC 66 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || || |||||||||||||| || | | || || ||||| || Sbjct 65 TCCAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCTGGAGGAATACCCTCCTTGTCC 6 Query 152013 TGAAT 152017 || || Sbjct 5 TGGAT 1 >seq83756 Length=1298 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 ||||| || ||||| || | ||||||||||| | ||| || ||||| || || || ||| Sbjct 13 TTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTT 72 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| | || | | |||| || ||| || ||||| || || || ||||| ||| Sbjct 73 GCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTG 132 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||| |||||| Sbjct 133 AGGGTCTTCACAAAGATCTGCAT 155 >seq385372 Length=416 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || || | |||||| ||||| | || || || Sbjct 195 GAGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCGAGGGTGTGGCCGTC 136 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| |||| ||||||||| | || ||| || ||||| || Sbjct 135 CTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATGCCCTCCTTATC 76 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || ||| ||||| | || | | |||| ||||| || || || || || || Sbjct 75 CTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGT 16 Query 152072 TTTGCCCGTGAGAGT 152086 |||||||| || || Sbjct 15 CTTGCCCGTCAGGGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1143972441886780