Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq351396 295 8e-75 seq162061 206 3e-48 seq597246 147 3e-30 seq664408 143 3e-29 seq217498 120 4e-22 seq63256 118 1e-21 seq623740 89.7 6e-13 seq171123 89.7 6e-13 seq472319 87.8 2e-12 seq466979 87.8 2e-12 seq279680 86.0 7e-12 seq71309 82.4 9e-11 >seq351396 Length=451 Score = 295 bits (326), Expect = 8e-75 Identities = 267/336 (79%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 178255 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTC 178314 |||||||| || |||||||| |||||||| || || || || |||||||||||||| || Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 178315 GGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 178374 || || | ||||||||||| || ||||||||||| ||||| | ||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 178375 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 178434 || || |||||||| || || ||||||||||||||| | ||| |||| || ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 178435 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAAC 178494 ||||| || |||||||| |||||||| || | | |||||||| || || | || Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 178495 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAAT 178554 || ||||| || | ||||||| ||| ||||||||||||||| |||||||| |||||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 178555 GCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 ||||||||||||||||| ||||| |||||| |||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGCTGCTCTTGAA 83 >seq162061 Length=815 Score = 206 bits (228), Expect = 3e-48 Identities = 249/336 (74%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 179142 CTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG-TCT 179200 |||||||| || || || || |||||||||||| | || || |||||| | || || ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 179201 AGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTC 179260 || | | || ||||| ||||||||| | || ||||||||||| || || ||||| || Sbjct 276 GTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 179261 TGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGT 179320 ||| || || || ||||| || || || || ||||||||||||||| ||||| || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 179321 TGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCC 179380 ||||| || || || ||| | || ||| | || || || || || |||||| | ||||| Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 179381 GTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGG 179440 || || |||||||| || || || | | |||| || |||| || || |||||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 179441 TGCTACAGTAGAGAACACACTCTTTGAAGACAGTGA 179476 || || ||||| ||||| || ||||| ||| |||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGA 550 >seq597246 Length=243 Score = 147 bits (162), Expect = 3e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 177766 TATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCAC 177825 ||||| ||||| || || ||||||||| || ||||| |||| || || || | ||| Sbjct 231 TATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCGATCGGATTGCAC 172 Query 177826 TTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTC 177885 || || || || |||||||| || ||| | ||||||||| | |||||||||||||||| Sbjct 171 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 112 Query 177886 CAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAA 177945 | || || | | |||||| | | ||| | | || |||||||||||||||||| Sbjct 111 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 52 Query 177946 CTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCT 177996 ||| || ||| | ||||||||||| ||||| ||| |||||||| ||| Sbjct 51 CTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCAGCT 1 >seq664408 Length=200 Score = 143 bits (158), Expect = 3e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 177981 TGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGG 178040 ||| |||||||| ||||| || || || || ||||||| ||| | |||| ||| | || Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 178041 TCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCT 178100 |||||| |||||||| | |||||| | || || ||| | ||||||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 178101 TGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGG 178160 ||| ||||| ||||||||||||||||| ||||| || ||||||||||| || || ||||| Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 178161 TGTCTTTGGTGG 178172 ||| || || || Sbjct 13 TGTATTCGGCGG 2 >seq217498 Length=656 Score = 120 bits (132), Expect = 4e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||||| |||| ||| | || ||||| || |||| ||||||||||| || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || ||||| || || |||| ||| ||||||| || Sbjct 381 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 439 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 440 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 499 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTC 177806 || | ||||||||| || ||||| |||| Sbjct 500 TATTCTCTCTGGTGCTATTATTCCTACTTC 529 >seq63256 Length=1526 Score = 118 bits (130), Expect = 1e-21 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 179067 CTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTA 179126 || |||||||| || ||||| || |||||||| |||||| || | || || || Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 179127 TGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTT 179186 ||| | ||||| || |||||||| || || || || |||||||||||| | || || ||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 179187 GAAATCGCAC-GTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAAT 179245 ||| | || | |||| || | | || ||||| ||||||||| | || |||| |||||| Sbjct 141 GAACTTGCTCGGTCTGTTCAAT-TGCGGCCTTATAATGCAATCTCATTCTCTGATCCAAT 199 Query 179246 TGCTGTCTTTGTGTCTG 179262 || || ||||| |||| Sbjct 200 CGCGGTTTTTGTTTCTG 216 >seq623740 Length=225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/190 (72%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 179216 TTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGT--CTGTTTTTCTCATG 179273 ||| ||||| ||| | || ||| ||| ||| || || ||| ||| |||| || || || Sbjct 190 TTATAATGCCATCTCATTCTCTAGTC-AATCGCGGTTTTTTTGTTTCTGTATTCCTTATT 132 Query 179274 TATCCTCTCGGACAGTCC---TCG--TGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGA 179328 ||||| || || | | ||| ||||||||||||||| ||||| || ||||| | Sbjct 131 TATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAA 72 Query 179329 TTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACA 179388 | || || ||| | || ||| | || || || || || |||||| | ||||| || || | Sbjct 71 TATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATA 12 Query 179389 TGATGGGTGT 179398 ||||||| || Sbjct 11 TGATGGGAGT 2 >seq171123 Length=784 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 178434 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATA--GTCAGGGCAAAGTCCTG 178491 |||||| || |||||| | || ||||| || | | |||| |||| ||| || | Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 178492 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGT 178551 || || || | || | ||||||||||| | ||||||||||||| |||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 178552 AATGCTCACAACTTCCCTCTTGA 178574 |||||||||||||||||||| || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 >seq472319 Length=337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 178260 CAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCG 178319 ||| || |||||||| ||||||| || || || || |||||||||||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 178320 CCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTT 178370 | ||||||||||| || ||||||||||| ||||| | |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq466979 Length=342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 179505 CCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATC 179564 || || |||| || || || ||||| ||||| ||||| ||| | || ||||| || ||| Sbjct 228 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGGTCCCAAATC 169 Query 179565 TTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTT 179615 |||||| | || || |||||| |||||| |||||||||||||| | ||| Sbjct 168 TTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq279680 Length=543 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 178511 TCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTC 178570 ||||||||||| | ||||||||||||| |||||| | || ||||||||||||||||||| Sbjct 490 TCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGAAATGCTCACAACTTCCCTC 431 Query 178571 TTGACCTCGCTGCTGCTGAA 178590 | ||||| | | || |||| Sbjct 430 TAGACCTAGTTTCTCTTGAA 411 >seq71309 Length=1427 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 178257 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGG 178316 |||||| || |||||||| |||||||| || || || || || |||||||| || Sbjct 678 TTACAATTTTGGTCAAGAGGAAGAGACTTATAATATTGTGTTTGTGCATGGTTATTTTTT 737 Query 178317 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTC 178371 || | ||||||||||| |||| ||||||||||| ||||| | ||||| ||| Sbjct 738 CCGATTAATCTTCCAATATGCATGTTTCAACAACTCACGTTCTTTCCACTTTTTC 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591341600868800