Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq351396 275 7e-69 seq162061 199 5e-46 seq664408 140 4e-28 seq597246 136 5e-27 seq217498 127 2e-24 seq466979 100 3e-16 seq623740 93.3 5e-14 seq63256 91.5 2e-13 seq45626 87.8 2e-12 seq472319 84.2 3e-11 seq171123 84.2 3e-11 >seq351396 Length=451 Score = 275 bits (304), Expect = 7e-69 Identities = 259/330 (78%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 170009 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTC 170068 |||||||| || |||||||| |||||||| || || || || || ||||| ||||| || Sbjct 418 GGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTT 359 Query 170069 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTC 170128 || || | ||||||||||| ||| ||||||||||| ||||| | ||||||||| | Sbjct 358 GGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTG 299 Query 170129 GCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTC 170188 || || |||||||| || || ||||||||||| ||| | ||| | || ||||| ||| Sbjct 298 GCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 239 Query 170189 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 170248 ||||| || |||||||| |||||||| || | | ||| |||| ||||| || | || Sbjct 238 AACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAAT 179 Query 170249 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 170308 || ||||| || | ||||||| ||| |||||| |||||||| |||||||| |||||| Sbjct 178 ACTTGGGCTGATATCATCAACCGAGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 119 Query 170309 GCTCACAACTTCCCTCTCGACCTCGCTGCT 170338 ||||||||||||||||| ||||| |||||| Sbjct 118 GCTCACAACTTCCCTCTAGACCTAGCTGCT 89 >seq162061 Length=815 Score = 199 bits (220), Expect = 5e-46 Identities = 255/349 (73%), Gaps = 2/349 (1%) Strand=Plus/Plus Query 170898 CTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCT 170956 |||||||| || ||||| || |||||||||||| | || || |||||| | ||| ||| Sbjct 216 CTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCT 275 Query 170957 CGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAG 171016 || | | || || ||||||||| | ||||||||||| ||||| || ||||| Sbjct 276 -GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGGTCCAATCGCGGTTTTTGTTTC 334 Query 171017 CGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGT 171076 || ||||| || ||||| || ||||| || |||||||||| || || ||||| || Sbjct 335 TGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGT 394 Query 171077 TGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCC 171136 |||||||| || || ||| | || ||| | ||||| || || || ||||| |||| || Sbjct 395 AGCAGCAATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 454 Query 171137 ATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGG 171196 ||||||||||||||| ||||| || | | |||| || |||| | || |||||||| Sbjct 455 ATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGG 514 Query 171197 TGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACC 171245 | || ||||| || ||| | | ||| || |||||| ||||| ||| Sbjct 515 AGCGACCGTAGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACC 563 >seq664408 Length=200 Score = 140 bits (154), Expect = 4e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 169735 TGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGG 169794 |||||| ||||| ||||| |||||||| || | ||||||||| || | ||||| |||| Sbjct 193 TGTTGCATACTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 134 Query 169795 GCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCT 169854 ||||| |||||||| | ||||||| | || || || || | || |||| ||| | Sbjct 133 TCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGAATATCTGGTATTTTCAACTTTATGAT 74 Query 169855 GGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGG 169914 || ||||| || |||||||||||||| ||||| || ||||||||| | ||||| || || Sbjct 73 TGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGG 14 Query 169915 AGTGTTTGGTGG 169926 || || || || Sbjct 13 TGTATTCGGCGG 2 >seq597246 Length=243 Score = 136 bits (150), Expect = 5e-27 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 169508 GGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCA 169567 |||||| | | ||||| ||||| || |||||||||||| || | || |||| || Sbjct 243 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCGGCGGCG 184 Query 169568 ATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAAC 169627 ||||| | ||||| || || || |||||||| ||| | | ||||| ||||| ||||| Sbjct 183 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 124 Query 169628 GGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGT 169687 |||||||||| | || |||| | |||||| | | || | | ||| |||||| Sbjct 123 GGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 64 Query 169688 CGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCT 169747 |||||||||||| | | ||| |||||||||| |||||||| |||||| ||||| Sbjct 63 CGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATACTCA 4 Query 169748 GCT 169750 ||| Sbjct 3 GCT 1 >seq217498 Length=656 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| |||||| |||| |||||| |||||||| || |||| |||||||| || || Sbjct 321 TTCTGCAACTGGATAACTAGCACTGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 380 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | || | ||||| || || || ||||||||||||| ||| || Sbjct 381 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCT 440 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || || || ||| |||||||| | | ||||| ||||| Sbjct 441 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 500 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCC 169561 || ||||||||||| || | || ||||| Sbjct 501 ATTCTCTCTGGTGCTATTATTCCTACTTCC 530 >seq466979 Length=342 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 171252 GCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGG 171311 || ||| || | ||||| | ||||| || ||||| |||||||||||||| | || ||| Sbjct 237 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACTGCTTTTGG 178 Query 171312 TCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTT 171371 || || || |||||| | || || |||||| |||||||| |||||||||||||| ||| Sbjct 177 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 118 >seq623740 Length=225 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/190 (72%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 170973 TACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTT--GTCAGCGTGTTCCTCATCT 171030 || ||||| ||| | |||||| ||| ||||| || ||| || || ||||| || | Sbjct 189 TATAATGCCATCTCATTCTCTAGTCA-ATCGCGGTTTTTTTGTTTCTGTATTCCTTATTT 131 Query 171031 ATCCTCTTGGGCAGT-CAA----GTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAAT 171085 |||| || ||| | | | |||||||||| || || ||||| || |||||||| Sbjct 130 ATCCACTGGGGTGGGGCGATTCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCAAT 71 Query 171086 CTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATAT 171145 || || ||| | || ||| | ||||| || || || ||||| |||| ||||||||||| Sbjct 70 ATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 11 Query 171146 GATGGGTGTT 171155 |||||| ||| Sbjct 10 GATGGGAGTT 1 >seq63256 Length=1526 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 170823 CTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTC 170882 ||||| ||||| || || | || || ||||| ||||||| || | || || | Sbjct 21 CTACTATGGGGGCCGGAAGCACAAGGAGATTTTACTCGCTGGTGTCAGTTAGGCGGTTTA 80 Query 170883 TGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTT 170942 |||| ||||| || |||||||| || ||||| || |||||||||||| | || || ||| Sbjct 81 TGGACGTTTGTAGCTCTCCACGGGGCTTTTGCACTAATAGGTTTCATGTTACGCCAATTT 140 Query 170943 GAAATCAGTC-GTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTAT 171001 ||| | || |||| || | | || || ||||||||| | ||||||| ||| || Sbjct 141 GAACTTGCTCGGTCT-GTTCAATTGCGGCCTTATAATGCAATCTCATTCTCTGATCCAAT 199 Query 171002 CGCTGTGTTTGT 171013 ||| || ||||| Sbjct 200 CGCGGTTTTTGT 211 >seq45626 Length=1813 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 167431 CGTGTGCAGATGATCAATACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACT 167490 ||||| |||| || | |||||||| |||||||| ||||| || || ||||| | || Sbjct 1305 CGTGT-CAGAGGACAACTACATCCTGGACGCGGCCGAGGAGGCCGGCCTGGACCTGCCCT 1247 Query 167491 ACTCGTGCCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAG 167550 |||||||||| || ||||| || || | ||||| || || || | ||| ||| | Sbjct 1246 ACTCGTGCCGCGCCGGCGCATGCTCCACCTGCGCCGGCAAGGTCCTGGAGGGCGGCGTGG 1187 Query 167551 ATCAAAGCGATCAATCCTTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCT 167610 | || || || || ||||| ||||| || || | | || || | | |||||||| Sbjct 1186 ACCAGTCGGACCAGTCGTTCCTCGACGAGGAGCAGGTCGGCGCCGGCTACGCTCTCACCT 1127 Query 167611 GTGTGTCCTATCCAACCAGCGACTGTGT 167638 | || |||| || ||| |||||| || Sbjct 1126 GCGTCGCCTACCCGACCTCCGACTGCGT 1099 >seq472319 Length=337 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 170014 CAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCG 170073 ||| || |||||||| ||||||| || || || || || ||||| ||||| || || | Sbjct 337 CAAATTTGGTCAAGAGGAAGAGATTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCA 278 Query 170074 CCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTT 170124 | ||||||||||| ||| ||||||||||| ||||| | |||||||| Sbjct 277 ATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTT 227 >seq171123 Length=784 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/143 (73%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 170188 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATG--GTCAGGGTCGTGTGCTC 170245 |||||| || |||||| | || ||||| || | | ||| |||| || || || | Sbjct 642 CAACCTAAATGGTTTCCATTTTAACCAATCTGTAGTTGATACAGTCAAGGCCGCGTTATT 701 Query 170246 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGT 170305 || || || | || | ||||||||||| | |||| |||||||| |||||| | || Sbjct 702 AATACTTGAGATGATATCATCAACCGTGCTAATTTTGGTATGGAAGTAATGCACAAACGA 761 Query 170306 AATGCTCACAACTTCCCTCTCGA 170328 |||||||||||||||||||| || Sbjct 762 AATGCTCACAACTTCCCTCTAGA 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587267015873600