Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6868 158 9e-34 seq113513 138 8e-28 seq138762 131 1e-25 seq12510 125 5e-24 seq5401 125 5e-24 seq83756 107 1e-18 seq272473 102 6e-17 seq213696 102 6e-17 seq11560 98.7 7e-16 seq307656 93.3 3e-14 seq87352 93.3 3e-14 seq84174 93.3 3e-14 seq59492 93.3 3e-14 seq99491 91.5 1e-13 seq12734 91.5 1e-13 seq117604 89.7 4e-13 seq150568 87.8 1e-12 seq25253 87.8 1e-12 seq399903 84.2 2e-11 >seq6868 Length=3892 Score = 158 bits (174), Expect = 9e-34 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| |||||||| ||| |||| || Sbjct 2899 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 2958 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||||||||| ||||| | |||||||| || | || | |||||||| ||| Sbjct 2959 CAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTG 3018 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||| | | | ||||||||| | |||||||||| ||| || ||||| Sbjct 3019 GATTTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTT 3078 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||||||||||||| ||||| Sbjct 3079 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 3108 >seq113513 Length=1062 Score = 138 bits (152), Expect = 8e-28 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCG 44185 ||||||||| || ||| |||||||||||||||||| || ||||| || || | || Sbjct 994 CACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCGAG--GGTCCTGCCATCC 937 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || |||||||| || |||||||| | |||||||| || | || | || ||||| ||| Sbjct 936 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTGATGCCCTCCTTGTCC 877 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | | | ||||||||| | |||||||||| ||| || ||| Sbjct 876 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTC 817 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||||||||||||||| ||||| Sbjct 816 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 785 >seq138762 Length=915 Score = 131 bits (144), Expect = 1e-25 Identities = 159/213 (75%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| |||||| |||||| || | |||||| || | ||| ||| |||| || Sbjct 694 CACGAGGTGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAGAGAGGGTGCGGCCGTCCTC 635 Query 44188 CAGCTGCTT-CCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 |||||||| |||||| ||||| | ||||||||| | | || | || | ||| ||| Sbjct 634 GAGCTGCTTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGCGGGATGCCCTGCTTGTCCT 575 Query 44247 TTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | ||||||||| | |||||||||| ||| || ||| Sbjct 574 GGATCTTAGCCTT-AACGTTGTCAATGGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTC 516 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| ||||||||||||||||| |||||| Sbjct 515 TTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 483 >seq12510 Length=3164 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| |||||||||||||| || || ||| | || ||| Sbjct 3083 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCATCCTCC 3024 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| ||| |||| || | || | | ||||| ||| Sbjct 3023 AGCTGCTTTCCAGCGAAGATCAGTCGCCGCTGGTCCGGGGGGATGCACTCCTTGTCCTGG 2964 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | ||||| || | ||| || || || | || || ||||| Sbjct 2963 ATCTTCGCCTTCACATTGTCGATGGTATCAGAGGACTCGACTTCAAGTGTGATGGTCTTG 2904 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||| ||||| ||||| Sbjct 2903 CCTGTGAGGGTCTTCACAAAGATCTGCAT 2875 >seq5401 Length=4188 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| |||||||| || || ||||| ||| | || || Sbjct 4141 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCGAGGGTGCGGCCATCCTCG 4082 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | |||||||| || | || | || ||||| ||| Sbjct 4081 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGA 4022 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | ||| |||||||||| || || ||||| Sbjct 4021 ATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTG 3962 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||||||||| ||||| Sbjct 3961 CCGGTCAGGGTCTTCACGAAGATCTGCAT 3933 >seq83756 Length=1298 Score = 107 bits (118), Expect = 1e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || ||||||||||| |||||||| | |||||||| || | ||| | || ||||| Sbjct 1 TCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 60 Query 44243 TCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| ||||| ||| | || || | |||||||| | ||| |||||||| | || || Sbjct 61 TCCTGGATCTT-TGCCTTAACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGAT 119 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||||||||||||| ||||| ||||| Sbjct 120 GGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 155 >seq272473 Length=553 Score = 102 bits (112), Expect = 6e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| ||||| || ||| |||| || Sbjct 293 CACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTC 234 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||||||||| ||||||| ||||||||| || Sbjct 233 CAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTC 198 >seq213696 Length=664 Score = 102 bits (112), Expect = 6e-17 Identities = 137/188 (73%), Gaps = 7/188 (4%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| | ||| |||||| || ||||||||||| || || ||| |||| || Sbjct 427 CACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCGTCCTC 368 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAAC---GCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||| ||||| ||||||| | ||||||| || | || | |||||||| || Sbjct 367 CAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCCGGCGGGATGCCTTCCTTATC 308 Query 44245 CGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 | |||||| ||| || ||| | |||||||| | ||| || ||||| | || || Sbjct 307 CTGGATCTTCGCCTTAACATTGT--CAATGGTGTCAGAGGACTCGACCTCGAGGGTGATG 250 Query 44303 GTCTTTCC 44310 ||||| || Sbjct 249 GTCTTGCC 242 >seq11560 Length=3259 Score = 98.7 bits (108), Expect = 7e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| |||||| |||||| |||| |||||| |||||||| ||| | || || Sbjct 1960 CACCAGGTGGAGCGTGGACTCCTTCTGGACGTTGTAGTCGGCGAGCGTGCGGCCATCCTC 2019 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||||||| ||||| | |||||||| || ||||||||| | |||| Sbjct 2020 CAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCTCGGGCACACCTGCGGTTTC 2076 >seq307656 Length=504 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| ||| ||| ||| | || || | || || ||||| || Sbjct 490 TCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGTTTGCCGGCGAAA 431 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||||||||| |||| || | |||||||| ||| |||||| |||| | Sbjct 430 ATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCCTGGATCTTCGATTTCACATTG 371 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | || ||||| | ||||| || || ||||| | ||||| || Sbjct 370 TCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTCAAAGTCTTGACA 311 Query 44327 AAGATTTGCAT 44337 ||||||||||| Sbjct 310 AAGATTTGCAT 300 >seq87352 Length=1264 Score = 93.3 bits (102), Expect = 3e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 44154 GGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAAC 44213 |||||||||| | | || ||| | || || |||||||| |||| || || | | Sbjct 1264 GGATGTTGTAGGCTGTCAGAGTGCGGCCATCCTCAAGCTGCTTGACGGCGAAAATGAGGC 1205 Query 44214 GCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGG 44273 ||||| | |||| ||| | || ||||| ||| ||||| ||| | | | |||| Sbjct 1204 GCTGCGGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGG 1145 Query 44274 TGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTT 44333 |||| | ||| || ||||| | ||||| ||||| || |||||||||||||| ||||| | Sbjct 1144 TGTCAGAGGACTCGACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCT 1085 Query 44334 GCAT 44337 |||| Sbjct 1084 GCAT 1081 >seq84174 Length=1294 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||| || ||||| ||| ||||||||||||||| ||||| || | ||| | || Sbjct 126 CAGCACAAGATGAAGAGTGGACTCCTTTTGGATGTTATAATCCGCCAAGGTACGCCCATC 67 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||||||||| ||||| || | | ||||||||||| ||| | ||| ||||| || Sbjct 66 CTCCAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCTGGAGGAATACCCTCCTTGTC 7 Query 44245 C 44245 | Sbjct 6 C 6 >seq59492 Length=1577 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||| || ||||| |||||| ||||||||||| ||||| || || | || || Sbjct 285 CACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCGGCCATCCTC 226 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||||||||||||||||| ||||||||| || Sbjct 225 CAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTC 190 >seq99491 Length=1162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| ||||| || ||| | || || Sbjct 880 CACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGCGTGCGGCCTTCCTC 821 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 ||||||||| ||||| ||||||| |||||||| |||| Sbjct 820 CAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCTG 783 >seq12734 Length=3143 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/153 (74%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 |||||||||||||||| ||| | | |||||||| || | || | |||||||| ||| Sbjct 3143 CCAGCTGCTTCCCGGCGAAGTTGAGCCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCT 3084 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| || ||| | ||||||||| | || ||||| | || || || Sbjct 3083 GGATCTTTGCCTTGACATTGT--CGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGT 3026 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| |||||||| |||||||| ||||| Sbjct 3025 CTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 2993 >seq117604 Length=1036 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || || |||||| ||||||||||| || || || ||| | || || Sbjct 920 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 979 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||| || || ||||||| |||||||||||| | ||| | || ||||| || Sbjct 980 CAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTC 1036 >seq150568 Length=861 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 44154 GGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAAC 44213 |||||||||| || ||||| | | | || ||||||||||||||||||||||||| | Sbjct 1 GGATGTTGTAGTCCGCGAGGGTGTGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGC 60 Query 44214 GCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||| ||||| ||||||||| | |||| Sbjct 61 GCTGCTGCTCTGAGGGCACACCTACGGTTTC 91 >seq25253 Length=2390 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| |||||||| ||| |||| || Sbjct 109 CACCAGGTGCAGCGTCAACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 50 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||| ||||| ||||| | ||| |||| || Sbjct 49 CAGCTGCTTACCGGCGAAGATGAGGCGCCGCTGGTC 14 >seq399903 Length=402 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| ||||| |||||| ||||||||||| || || || || |||| || Sbjct 246 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCTGCTAGCGTCCGGCCGTCCTC 187 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||||||||||||| ||||| | |||||||| || Sbjct 186 CAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTC 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357067613193060