Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq113513 159 8e-34 seq5401 156 1e-32 seq6868 150 4e-31 seq307656 145 2e-29 seq385372 132 1e-25 seq12734 132 1e-25 seq138762 131 4e-25 seq87352 125 2e-23 seq83756 125 2e-23 seq213696 120 7e-22 seq32537 95.1 3e-14 seq59492 91.5 4e-13 seq647349 87.8 4e-12 seq99491 87.8 4e-12 seq263623 86.0 1e-11 seq105659 84.2 5e-11 seq21142 84.2 5e-11 >seq113513 Length=1062 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || |||||||| ||| ||| Sbjct 788 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGAGCAGCGAC 847 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||| ||||||||||||| Sbjct 848 ACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCACTCCGGACCAGCAG 907 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||| ||||| ||||| || || || || ||| || Sbjct 908 CGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACCCTCGCTGACTACAACATC 967 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || || || Sbjct 968 CAAAAGGAGTCCACCCTCCACCTGGT 993 >seq5401 Length=4188 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||| | |||||||| ||| ||| Sbjct 3936 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGTCCTCGGAC 3995 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| || || || ||||| ||||||||||| Sbjct 3996 ACCATCGACAACGTCAAGGCTAAGATTCAGGATAAGGAGGGCATCCCGCCGGACCAGCAG 4055 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||| ||||| | || || || || |||||| || Sbjct 4056 CGCCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCAGACTATAACATC 4115 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 4116 CAGAAGGAGTCCACCCTCCACCTCGT 4141 >seq6868 Length=3892 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || |||||||| ||| ||| Sbjct 3105 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGAGCAGCGAC 3046 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || || |||||||| ||||| || || ||||||||||| Sbjct 3045 ACCATCGACAACGTCAAGGCTAAAATCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAG 2986 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||||| || ||| || Sbjct 2985 CGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACAACATC 2926 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 2925 CAGAAGGAGTCGACGCTGCACCTGGT 2900 >seq307656 Length=504 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || ||||| || || ||||| ||||| || ||| Sbjct 75 CAGATTTTCGTCAAGACTCTAACTGGCAAAACCATTACACTCGAAGTGGAGGCTTCGGAC 134 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||| ||||||||||||||||| || || || ||||||||| Sbjct 135 ACTATTGATAATGTCAAGTCAAAAATTCAGGACAAAGAAGGCATACCACCAGACCAGCAA 194 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || ||||| || ||||| || | ||||| ||| ||||| || Sbjct 195 CGTCTCATTTTCGCTGGTAAACAACTAGAAGACGGTCGCACTCTAAGCGACTATAATATC 254 Query 178104 CAAAAAGAATCAACACTGCA 178123 |||||||| || || || || Sbjct 255 CAAAAAGAGTCTACCCTTCA 274 >seq385372 Length=416 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 || || || || || || ||||| || |||||||| ||| ||||||||||| |||||| Sbjct 1 ACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGAGCAGCGACACCATCGACAACGTC 60 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || |||||| ||||| || || || ||||| || |||||||| || || ||||||||| Sbjct 61 AAGGCAAAGATCCAGGATAAGGAGGGCATCCCGCCCGACCAGCAGCGGCTCATCTTCGCC 120 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || || |||||||| || || || || ||||| || ||||| || || || || || Sbjct 121 GGCAAGCAGCTCGAGGACGGCCACACCCTCGCCGACTACAACGTGCAGAAGGAGTCCACG 180 Query 178119 CTGCATCTTGT 178129 || || || || Sbjct 181 CTACACCTCGT 191 >seq12734 Length=3143 Score = 132 bits (146), Expect = 1e-25 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||||||||||| || ||| ||| Sbjct 2996 CAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGAGCAGCGAC 3055 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct 3056 ACCATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGAATCCCGCCGGACCAGCAG 3115 Query 178044 CGACTTATCTTCGCCGGAAAACAGCT 178069 || || | ||||||||| || ||||| Sbjct 3116 CGGCTCAACTTCGCCGGGAAGCAGCT 3141 >seq138762 Length=915 Score = 131 bits (144), Expect = 4e-25 Identities = 154/207 (74%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||| || |||||||| ||| ||| Sbjct 487 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGAGCAGCGAC 546 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| |||||||| | || ||||| |||| |||||| Sbjct 547 ACCATTGACAACGTTAAGGCTAAGATCCAGGACAAGCAGGGCATCCCGCCGGGCCAGCAG 606 Query 178044 CGACTTATCTTCGCC-GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || || ||||||||| ||||| |||||||| || || | || || | || || ||||| Sbjct 607 CGTCTCATCTTCGCCGGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCTGACTACAACGT 666 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 667 GCAGAAGGAGTCCACGCTGCACCTCGT 693 >seq87352 Length=1264 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || || || || ||||||||||| || ||| ||| Sbjct 1084 CAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTCGAGTCCTCTGAC 1143 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || |||||||| |||| ||| Sbjct 1144 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCCGCAG 1203 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || || ||||||| || ||||| || ||||| | ||||| Sbjct 1204 CGCCTCATTTTCGCCGTCAAGCAGCTTGAGGATGGCCGCACTCT 1247 >seq83756 Length=1298 Score = 125 bits (138), Expect = 2e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || || || |||||||| |||||||| ||| ||| Sbjct 152 CAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCTGAC 93 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||| |||||||| || || ||||||||||||||||| Sbjct 92 ACCATCGACAATGTTAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 33 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGA 178075 || || ||||| || || || ||||| || || Sbjct 32 CGCCTCATCTTTGCTGGGAAGCAGCTTGAGGA 1 >seq213696 Length=664 Score = 120 bits (132), Expect = 7e-22 Identities = 138/185 (75%), Gaps = 3/185 (2%) Strand=Plus/Plus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007 || || || |||||||||||||| || ||| |||||||| || || || || ||| Sbjct 242 GGCAAGACCATCACCCTCGAGGTCGAGTCCTCTGACACCATTGACAATGTTAAGGCGAAG 301 Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGAC---CAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||| || ||||| ||||| |||||| ||||| ||||| ||||||||||| || Sbjct 302 ATCCAGGATAAGGAAGGCATCCCGCCGGACCAGCAGCAGCGACTGATCTTCGCCGGCAAG 361 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | || ||||| ||||| ||| | || || || || ||| | || Sbjct 362 CAGCTGGAGGACGGCCGCACCCTTGCAGATTACAACATTCAGAAGGAGTCCACAATCCAC 421 Query 178125 CTTGT 178129 || || Sbjct 422 CTGGT 426 >seq32537 Length=2132 Score = 95.1 bits (104), Expect = 3e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 178023 GGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG 178082 || ||||||||||||||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 1 GGCATCCCTCCGGACCAGCAGCGACTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGC 60 Query 178083 ACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || ||| |||| || ||||| || || || || || Sbjct 61 ACCCTTGCAGACTACAACATCCAGAAGGAATCCACCCTCCACCTCGT 107 >seq59492 Length=1577 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| ||||| ||||||||||| || || ||||| ||||| || ||||| || ||||| | Sbjct 177 AGGCATCCCGCCGGACCAGCAGCGTCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCG 236 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || ||||| || ||| |||| || || || || |||||||| || Sbjct 237 GACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCATCTGGT 284 >seq647349 Length=210 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || ||||||||||| ||||| || ||| ||| Sbjct 4 CAGATCTTCGTGAAGACCCTGACGGGGAAGACGATCACCCTGGAGGTCGAGAGCAGCGAC 63 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| |||||||| ||||| ||||| Sbjct 64 ACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGG 104 >seq99491 Length=1162 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || || || |||||||||||||| || ||| ||| Sbjct 578 CAGATCTTCGTGAAAACCCTGACGGGGAAGACCATCACCCTCGAGGTCGAGAGCAGCGAC 637 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| || ||||| ||||| Sbjct 638 ACCATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGG 678 >seq263623 Length=567 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||||| || || || || |||||||||||||| || || ||| Sbjct 461 CAGATCTTCGTGAAAACTCTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCTGAC 520 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCC 178030 |||||||| || ||||| ||||| || ||||| || || ||||| Sbjct 521 ACCATCGACAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCC 567 >seq105659 Length=1116 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || |||||||| |||||||| || ||| ||| Sbjct 342 CAGATCTTCGTCAAGACGCTGACGGGGAAGACGATCACGCTCGAGGTCGAGAGCAGCGAC 401 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| |||||||| ||||| Sbjct 402 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGG 442 >seq21142 Length=2581 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || ||||||||||| || || ||| ||| Sbjct 1697 CAGATCTTCGTGAAGACGCTGACGGGGAAGACCATCACCCTCGAAGTCGAGAGCAGCGAC 1756 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| |||||||| ||||| |||||||| ||||| Sbjct 1757 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGG 1797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1193456835098920