Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lolium_20perenne_20[genbank_20GCA_5F001735685.1_202016-09-20] 666,180 sequences; 481,479,386 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6868 178 1e-39 seq138762 170 2e-37 seq5401 163 3e-35 seq385372 149 6e-31 seq113513 145 7e-30 seq37865 123 2e-23 seq59492 107 2e-18 seq21142 107 2e-18 seq88253 100 3e-16 seq307656 96.9 3e-15 seq213696 96.9 3e-15 seq32537 96.9 3e-15 >seq6868 Length=3892 Score = 178 bits (196), Expect = 1e-39 Identities = 182/235 (77%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| |||||||| ||||||||| ||||| ||||||| Sbjct 2881 GCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 2940 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| |||| || |||||||| |||||||| || || ||||| ||||||| || Sbjct 2941 GAGCGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 3000 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||||| |||||| ||| | || | | | |||||||| ||||| Sbjct 3001 AATCCCTTCCTTGTCCTGGATTTTAGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCA 3059 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 |||||| ||| || || || |||||||| ||||| ||||| |||||||| || || Sbjct 3060 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTCTC 3114 >seq138762 Length=915 Score = 170 bits (188), Expect = 2e-37 Identities = 180/233 (77%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || ||||| || | ||| || ||||||||| ||||||||| | ||| ||||| || Sbjct 712 GCCCCCACGTAGGCGGAGCACGAGGTGCAGCGTGGACTCCTTCTGCACGTTGTAGTCAGA 653 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGC-TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| |||| ||||||||| || |||||||| || || ||||| ||| ||| | Sbjct 652 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCCGGCGAAGATGAGACGCTGCTGGCCCGGCG 593 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 | | || || ||||||| || | || || | |||| | | | |||||||| |||| Sbjct 592 GGATGCCCTGCTTGTCC-TGGATCTTAGCCTTAACGTTGTCAATGGTGTCGCTGCTCTCC 534 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| ||| || || || |||||||| ||||| ||||| ||||||||||| Sbjct 533 ACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGTT 481 >seq5401 Length=4188 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || || || || ||| ||||||||| ||||||||||| | Sbjct 4160 GCCGCCGCGAAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGC 4101 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || |||||||||||||| ||||| || |||||||| ||||||| || Sbjct 4100 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGG 4041 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||| ||| ||| | || || | ||| | | | ||||| ||||||| Sbjct 4040 GATGCCCTCCTTATCC-TGAATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCA 3982 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 3981 CCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3933 >seq385372 Length=416 Score = 149 bits (164), Expect = 6e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| |||||||| || | ||| || || |||||| ||||||||| | ||| ||||||| Sbjct 210 GCCCCCGCGTAGGCGGAGCACGAGGTGTAGCGTGGACTCCTTCTGCACGTTGTAGTCGGC 151 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||| | |||| |||||||||||||||||||| || || ||||| ||||| | || Sbjct 150 GAGGGTGTGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGG 91 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||| ||| || | ||||| | ||| | | | |||||||| ||||| Sbjct 90 GATGCCCTCCTTATCC-TGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCA 32 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGT 41844 |||||| ||| || || || |||||||| || Sbjct 31 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGT 1 >seq113513 Length=1062 Score = 145 bits (160), Expect = 7e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || || ||| |||||| || ||||| ||||| | | Sbjct 1011 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCG 952 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || |||||||||||||| || || || |||||||| ||||||| | Sbjct 951 AGGGTCCTGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGTG 892 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | ||| | | | |||||||| |||||| Sbjct 891 ATGCCCTCCTTGTCC-TGGATCTTAGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCAC 833 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 ||||| ||| || || || |||||||| ||||| ||||| |||||||| || || Sbjct 832 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTCTC 779 >seq37865 Length=1986 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | ||| || ||||| ||| ||||||||| | ||| ||||||| Sbjct 138 GCCGCCGCGCAGGCGGAGCACGAGGTGCAGTGTGGACTCCTTCTGCACGTTGTAGTCGGC 79 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| |||||||||||||| ||||| || || ||||| ||||| | || Sbjct 78 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGCCGCTGCTGGTCGGGCGG 19 Query 41755 AACGCTCTCCTTGTCC 41770 | || |||||||||| Sbjct 18 GATGCCCTCCTTGTCC 3 >seq59492 Length=1577 Score = 107 bits (118), Expect = 2e-18 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | ||||||||||||||| ||||||||| ||||| ||||||| Sbjct 302 CCGCCGCGGAGGCGGAGCACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 243 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || || || | || || |||||||| ||||| || ||||| ||||| |||||| ||||| Sbjct 242 AGCGTCCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCGGCGGG 183 Query 41755 A 41755 | Sbjct 182 A 182 >seq21142 Length=2581 Score = 107 bits (118), Expect = 2e-18 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || || |||||| ||||||||| ||| | ||||||| Sbjct 2050 CCCCCGCGGAGGCGAAGCACGAGGTGGAGCGTGGACTCCTTCTGGATGCTGTAGTCGGCC 1991 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 |||||||| |||| ||||||||||| || ||||| || |||||||| |||||| ||||| Sbjct 1990 AGGGTGCGGCCGTCATCGAGCTGCTTCCCCGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 1931 Query 41755 A 41755 | Sbjct 1930 A 1930 >seq88253 Length=1256 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| |||| ||| ||||||||| ||||| || || | Sbjct 1141 CCACCACGGAGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCCGCA 1200 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||| | || |||||||||||||| ||||| ||||||||||| ||||||| Sbjct 1201 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 1255 >seq307656 Length=504 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| |||||| ||||||||| | || || | || ||||||||||| Sbjct 490 TCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCTAATTGTTTGCCGGCGAAA 431 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || ||||| ||||| | |||| | ||||||||| || | || | || || Sbjct 430 ATGAGACGCTGCTGGTCTGGCGGAATTCCTTCCTTGTCC-TGGATCTTCGATTTCACATT 372 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | ||||| || ||| ||||| | || || ||||||||||||| ||||| || Sbjct 371 GTCAATGGTGTCAGACGCCTCTACCTCAAGGGTAATAGTTTTACCCGTCAAAGTCTTGAC 312 Query 41851 GAAAATCTGCAT 41862 || || ||||| Sbjct 311 AAAGATTTGCAT 300 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| || || || ||||||||| || ||||| |||| || || || || || ||||| Sbjct 263 CTCTTTTTGGATATTATAGTCGCTTAGAGTGCGACCGTCTTCTAGTTGTTTACCAGCGAA 204 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-AC 41788 || || || || ||||| | || | || || |||||| ||| |||||| ||| | | Sbjct 203 AATGAGACGTTGCTGGTCTGGTGGTATGCCTTCTTTGTCC-TGAATTTTTGACTTGACAT 145 Query 41789 GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 | | | |||||| | |||||| || | || || ||||| || || || ||||| Sbjct 144 TATCA-ATAGTGTCCGAAGCCTCCACTTCGAGTGTAATGGTTTTGCCAGTTAGAGTCTTG 86 Query 41849 ACGAAAATCTGCAT 41862 |||||||||||||| Sbjct 85 ACGAAAATCTGCAT 72 >seq213696 Length=664 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || | ||| ||||||||||||||| || || | Sbjct 445 GCCACCACGGAGGCGAAGCACCAGGTGGATTGTGGACTCCTTCTGAATGTTGTAATCTGC 386 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGC---GCTGTTGGTCCGC 41751 |||||||| |||| || ||||||||||||||||| ||||| | |||| ||||||| Sbjct 385 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGCTGGTCCGG 326 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTT 41778 || | || ||||| ||| ||| || Sbjct 325 CGGGATGCCTTCCTTATCCTGGATCTT 299 >seq32537 Length=2132 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || || || || ||| |||||||| ||||| ||||| | Sbjct 126 GCCGCCGCGAAGACGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGC 67 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 |||||||| | || |||||||||||||| ||||| || || ||||| ||||||| Sbjct 66 AAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGTCGCTGCTGGTCCG 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458454279016000