Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq6 89.7 5e-13
>seq6
Length=34899179
Score = 89.7 bits (98), Expect = 5e-13
Identities = 281/432 (65%), Gaps = 5/432 (1%)
Strand=Plus/Minus
Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020
|| || || || ||||| || | |||||||| | | ||| || ||||| || || ||
Sbjct 4328741 AGGCAAGCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTG 4328682
Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080
| |||||||| || || ||||| | ||| || || ||| ||| || || || ||
Sbjct 4328681 AGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAA 4328622
Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140
|| || ||||||||| | || || |||| | ||| |||||| | | || | |
Sbjct 4328621 AAGATGCCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCGGAAGACTCA 4328562
Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200
||||||| | |||| ||||| || | | | | | || || || ||
Sbjct 4328561 ---ATCCATTGGAGAGCCCATTCGGCCTTCCGGGCGACGGCAGGGACGGTGTCGATCGCG 4328505
Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260
| || | || | | |||| | || |||||||||| || ||| ||||
Sbjct 4328504 TGGAAGAGGCGAAACTTCACGTCGGGGTCCTTGATGTACGTATCGAGTAGAAGGGAGTAC 4328445
Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320
|| |||||||| |||||||| || || ||||| || ||||| ||| ||||| || |
Sbjct 4328444 ATCTCGGAGTGGATGTTCTCGATTGCAATCTGGAAACCGTAGAAGGCGCGGGCCTCGGGG 4328385
Query 17321 ATTTGAACTTCCACGTA-GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379
| ||| || || || | ||| || | || || || ||| |||||||||||| ||
Sbjct 4328384 AGTTGGACGTCG-CGCATGAAGCGGGCGGCCAGGTTCTCGAGGACGATGCCGTCGGAGGC 4328326
Query 17380 GGCGAAAAACGC 17391
||| ||||| ||
Sbjct 4328325 GGCAAAAAAGGC 4328314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517498639206120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |