Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 5e-13 >seq6 Length=34899179 Score = 89.7 bits (98), Expect = 5e-13 Identities = 281/432 (65%), Gaps = 5/432 (1%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || ||||| || | |||||||| | | ||| || ||||| || || || Sbjct 4328741 AGGCAAGCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTG 4328682 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || || ||| ||| || || || || Sbjct 4328681 AGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAA 4328622 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || ||||||||| | || || |||| | ||| |||||| | | || | | Sbjct 4328621 AAGATGCCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCGGAAGACTCA 4328562 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||||||| | |||| ||||| || | | | | | || || || || Sbjct 4328561 ---ATCCATTGGAGAGCCCATTCGGCCTTCCGGGCGACGGCAGGGACGGTGTCGATCGCG 4328505 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 | || | || | | |||| | || |||||||||| || ||| |||| Sbjct 4328504 TGGAAGAGGCGAAACTTCACGTCGGGGTCCTTGATGTACGTATCGAGTAGAAGGGAGTAC 4328445 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 || |||||||| |||||||| || || ||||| || ||||| ||| ||||| || | Sbjct 4328444 ATCTCGGAGTGGATGTTCTCGATTGCAATCTGGAAACCGTAGAAGGCGCGGGCCTCGGGG 4328385 Query 17321 ATTTGAACTTCCACGTA-GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | ||| || || || | ||| || | || || || ||| |||||||||||| || Sbjct 4328384 AGTTGGACGTCG-CGCATGAAGCGGGCGGCCAGGTTCTCGAGGACGATGCCGTCGGAGGC 4328326 Query 17380 GGCGAAAAACGC 17391 ||| ||||| || Sbjct 4328325 GGCAAAAAAGGC 4328314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517498639206120