Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq9 116 4e-21
seq3 113 5e-20
seq1 113 5e-20
seq8 109 6e-19
seq4576 107 2e-18
seq11 107 2e-18
seq1007 91.5 2e-13
seq6 86.0 7e-12
seq10 82.4 9e-11
>seq9
Length=34148863
Score = 116 bits (128), Expect = 4e-21
Identities = 145/195 (74%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| ||||| |||||||| ||||| || || |||| ||||||||||| ||||||||
Sbjct 33541399 TCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTCTAGCTGCTTCCCAGCGAAG 33541340
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
||||| | |||||| || | || | | |||||||||| ||| || |||| |||
Sbjct 33541339 ATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTT 33541281
Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168
| | | |||||| |||| ||||| || | || ||||| || || || || |||||
Sbjct 33541280 GTCGATCGTGTCCGAGCTC---TCCACCTCCAAGGTAATGGTCTTCCCGGTGAGGGTCTT 33541224
Query 43169 TACAAAGATTTGCAT 43183
|||||||| |||||
Sbjct 33541223 AACAAAGATCTGCAT 33541209
Score = 84.2 bits (92), Expect = 3e-11
Identities = 138/196 (70%), Gaps = 6/196 (3%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || || || || |||| || | || | | |||||
Sbjct 11332000 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGATCTCC----CCGCGAA 11332055
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|||| ||| ||||||| | | | | | ||||| ||| ||| || || | |||
Sbjct 11332056 GATGATACGCGGCTGGTCCGGCTGGATGTCCTCCTCCTCCTGGATCTTAGCCTTCA-CGT 11332114
Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| ||| ||||| |||| ||||| || |||||||| || ||||| |
Sbjct 11332115 TGTCGATCGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTCA 11332174
Query 43171 CAAAGATTTGCATTTT 43186
||||||||||||| ||
Sbjct 11332175 CAAAGATTTGCATCTT 11332190
>seq3
Length=30470407
Score = 113 bits (124), Expect = 5e-20
Identities = 144/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || |||||||| || || || || ||| | || || |||||||| || || ||
Sbjct 5991010 CTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGCCCATCCTCGAGCTGCTTCCCGGCAAA 5991069
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | ||| | || |||||| ||| ||| || || | |||
Sbjct 5991070 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGT 5991128
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| ||| ||||| |||| ||||| || || ||||| || ||||| |
Sbjct 5991129 TGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGAGTCTTCA 5991188
Query 43171 CAAAGATTTGCATTTT 43186
| ||||| ||||| ||
Sbjct 5991189 CGAAGATCTGCATCTT 5991204
>seq1
Length=27573629
Score = 113 bits (124), Expect = 5e-20
Identities = 144/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || || || ||| |||| || |||||||| || || ||
Sbjct 19376131 CTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAA 19376190
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|||||| ||||||||||| | ||| | | |||||||||| ||| || |||| |||
Sbjct 19376191 TATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 19376249
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| || ||||| |||| ||||| || || || || || ||||| |
Sbjct 19376250 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTCA 19376309
Query 43171 CAAAGATTTGCATTTT 43186
| ||||| ||||| ||
Sbjct 19376310 CGAAGATCTGCATCTT 19376325
>seq8
Length=35439739
Score = 109 bits (120), Expect = 6e-19
Identities = 155/214 (72%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
||||| || | ||| |||||| |||||||||||||| ||||| || || |||| ||
Sbjct 1222077 CACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCCTC 1222136
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
|||||||| ||||| || || || | ||||||||| | || | | |||||||||| |
Sbjct 1222137 GAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCC-T 1222195
Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149
| | |||| | | ||| | | | |||||| |||| || || || | |||||||
Sbjct 1222196 GGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAGCTC---TCAACCTCCAGGGTGATGG 1222252
Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || || || ||||| || ||||| |||||
Sbjct 1222253 TCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| || || || |||| || || |||| || |||||||||||||||||
Sbjct 1223266 CTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCAGCGAA 1223325
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| | ||||||||||| || | | ||||||||| ||| || || | |
Sbjct 1223326 GATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 1223385
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| ||||| || || | |||||||| ||||| || || || || ||
Sbjct 1223386 GTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 1223445
Query 43172 AAAGATTTGCAT 43183
||||| |||||
Sbjct 1223446 GAAGATCTGCAT 1223457
>seq4576
Length=2771
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||| || || || ||||| || || || || || | || || |||||||| || |||||
Sbjct 2682 CTCTTTCTGGATGTTGTAGTCCGCAAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAA 2623
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| | |||||||||| || | || ||| |||||| ||| || ||||| |||
Sbjct 2622 AATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATCTTAGCTTTGA-CGT 2564
Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| ||| || |||| ||||||||||| || || |||||||| |
Sbjct 2563 TGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTTTTTCCAGTGAGCGTCTTAA 2504
Query 43171 CAAAGATTTGCAT 43183
||||||| |||||
Sbjct 2503 CAAAGATCTGCAT 2491
>seq11
Length=25514024
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || || || || || || || || |||| || |||||||| || |||||
Sbjct 15140746 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAA 15140805
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | ||| | || |||||||||| ||| || || | |||
Sbjct 15140806 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 15140864
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| ||| ||||| || | ||||| || || ||||| | ||||| |
Sbjct 15140865 TGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGATCGTCTTCCCCGTCAAAGTCTTCA 15140924
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 15140925 CGAAGATCTGCAT 15140937
Score = 86.0 bits (94), Expect = 7e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||||| || || || ||| ||||||||| |||| |||||||||||||||| ||||
Sbjct 6137022 AAAAATTATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 6137081
Query 60117 TCACCACTATACTAC 60131
|||||||||||||||
Sbjct 6137082 TCACCACTATACTAC 6137096
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| | || || || ||| ||||||||| |||| |||||||||||||||| ||||
Sbjct 6097822 AAAAAATATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 6097881
Query 60117 TCACCACTATACTAC 60131
|||||||||||||||
Sbjct 6097882 TCACCACTATACTAC 6097896
>seq1007
Length=1704909
Score = 91.5 bits (100), Expect = 2e-13
Identities = 143/202 (71%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || || || || || |||| || |||||||| || |||||
Sbjct 32336 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 32395
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| || | | ||||||||| ||| || |||| |||
Sbjct 32396 GATGAGCCGCTGCTGGTCCTGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 32454
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | | ||| || ||||| |||| || || || || || || || ||||| |
Sbjct 32455 TGTCGATGGCGTCCGATGACTCCACCTCGAGGGTAATCGTCTTCCCGGTGAGGGTCTTCA 32514
Query 43171 CAAAGATTTGCATTTTTACGCC 43192
| ||||| ||||| ||| ||||
Sbjct 32515 CGAAGATCTGCATCTTTCCGCC 32536
>seq6
Length=34899179
Score = 86.0 bits (94), Expect = 7e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||||||||| || ||||| ||||| || || || | || || || ||||| ||||| ||
Sbjct 13144354 CTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 13144295
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||| | | |||||||| | || | | |||||| ||| ||| || ||||| |
Sbjct 13144294 TATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTGGCTTTGACATT 13144235
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | ||||| ||||| || || | ||||| || || || || || || || ||
Sbjct 13144234 GTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCGTCTTTCCAGTGAGAGTTTTGAC 13144175
Query 43172 AAAGATTTGCAT 43183
||||||||||||
Sbjct 13144174 AAAGATTTGCAT 13144163
>seq10
Length=33665772
Score = 82.4 bits (90), Expect = 9e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||| || ||| ||||||||| |||| |||||||||||||||| ||||
Sbjct 11198206 AAAAAAAATCTCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 11198265
Query 60117 TCACCACTATACTAC 60131
|||||||||||||||
Sbjct 11198266 TCACCACTATACTAC 11198280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571765714700520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |