Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9 116 4e-21 seq3 113 5e-20 seq1 113 5e-20 seq8 109 6e-19 seq4576 107 2e-18 seq11 107 2e-18 seq1007 91.5 2e-13 seq6 86.0 7e-12 seq10 82.4 9e-11 >seq9 Length=34148863 Score = 116 bits (128), Expect = 4e-21 Identities = 145/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| |||||||| ||||| || || |||| ||||||||||| |||||||| Sbjct 33541399 TCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTCTAGCTGCTTCCCAGCGAAG 33541340 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| | |||||| || | || | | |||||||||| ||| || |||| ||| Sbjct 33541339 ATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTT 33541281 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | |||||| |||| ||||| || | || ||||| || || || || ||||| Sbjct 33541280 GTCGATCGTGTCCGAGCTC---TCCACCTCCAAGGTAATGGTCTTCCCGGTGAGGGTCTT 33541224 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 33541223 AACAAAGATCTGCAT 33541209 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || | || | | ||||| Sbjct 11332000 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGATCTCC----CCGCGAA 11332055 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||| ||| ||||||| | | | | | ||||| ||| ||| || || | ||| Sbjct 11332056 GATGATACGCGGCTGGTCCGGCTGGATGTCCTCCTCCTCCTGGATCTTAGCCTTCA-CGT 11332114 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| ||||| |||| ||||| || |||||||| || ||||| | Sbjct 11332115 TGTCGATCGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTCA 11332174 Query 43171 CAAAGATTTGCATTTT 43186 ||||||||||||| || Sbjct 11332175 CAAAGATTTGCATCTT 11332190 >seq3 Length=30470407 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || || || || ||| | || || |||||||| || || || Sbjct 5991010 CTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGCCCATCCTCGAGCTGCTTCCCGGCAAA 5991069 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | || |||||| ||| ||| || || | ||| Sbjct 5991070 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGT 5991128 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| ||| ||||| |||| ||||| || || ||||| || ||||| | Sbjct 5991129 TGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGAGTCTTCA 5991188 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 5991189 CGAAGATCTGCATCTT 5991204 >seq1 Length=27573629 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || ||| |||| || |||||||| || || || Sbjct 19376131 CTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAA 19376190 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||| ||||||||||| | ||| | | |||||||||| ||| || |||| ||| Sbjct 19376191 TATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 19376249 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| |||| ||||| || || || || || ||||| | Sbjct 19376250 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTCA 19376309 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 19376310 CGAAGATCTGCATCTT 19376325 >seq8 Length=35439739 Score = 109 bits (120), Expect = 6e-19 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| |||||||||||||| ||||| || || |||| || Sbjct 1222077 CACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCCTC 1222136 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || || || | ||||||||| | || | | |||||||||| | Sbjct 1222137 GAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCC-T 1222195 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 | | |||| | | ||| | | | |||||| |||| || || || | ||||||| Sbjct 1222196 GGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAGCTC---TCAACCTCCAGGGTGATGG 1222252 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || ||||| || ||||| ||||| Sbjct 1222253 TCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| || || || |||| || || |||| || ||||||||||||||||| Sbjct 1223266 CTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCAGCGAA 1223325 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||||| || | | ||||||||| ||| || || | | Sbjct 1223326 GATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 1223385 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || || | |||||||| ||||| || || || || || Sbjct 1223386 GTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 1223445 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 1223446 GAAGATCTGCAT 1223457 >seq4576 Length=2771 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 2682 CTCTTTCTGGATGTTGTAGTCCGCAAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAA 2623 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | |||||||||| || | || ||| |||||| ||| || ||||| ||| Sbjct 2622 AATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATCTTAGCTTTGA-CGT 2564 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || |||| ||||||||||| || || |||||||| | Sbjct 2563 TGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTTTTTCCAGTGAGCGTCTTAA 2504 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 2503 CAAAGATCTGCAT 2491 >seq11 Length=25514024 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || || || || || || || |||| || |||||||| || ||||| Sbjct 15140746 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAA 15140805 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| | || |||||||||| ||| || || | ||| Sbjct 15140806 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 15140864 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| ||||| || | ||||| || || ||||| | ||||| | Sbjct 15140865 TGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGATCGTCTTCCCCGTCAAAGTCTTCA 15140924 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 15140925 CGAAGATCTGCAT 15140937 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| || || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 6137022 AAAAATTATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 6137081 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 6137082 TCACCACTATACTAC 6137096 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | || || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 6097822 AAAAAATATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 6097881 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 6097882 TCACCACTATACTAC 6097896 >seq1007 Length=1704909 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 32336 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 32395 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| || | | ||||||||| ||| || |||| ||| Sbjct 32396 GATGAGCCGCTGCTGGTCCTGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 32454 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | | ||| || ||||| |||| || || || || || || || ||||| | Sbjct 32455 TGTCGATGGCGTCCGATGACTCCACCTCGAGGGTAATCGTCTTCCCGGTGAGGGTCTTCA 32514 Query 43171 CAAAGATTTGCATTTTTACGCC 43192 | ||||| ||||| ||| |||| Sbjct 32515 CGAAGATCTGCATCTTTCCGCC 32536 >seq6 Length=34899179 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| ||||| || || || | || || || ||||| ||||| || Sbjct 13144354 CTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 13144295 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||| | | |||||||| | || | | |||||| ||| ||| || ||||| | Sbjct 13144294 TATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTGGCTTTGACATT 13144235 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| ||||| || || | ||||| || || || || || || || || Sbjct 13144234 GTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCGTCTTTCCAGTGAGAGTTTTGAC 13144175 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 13144174 AAAGATTTGCAT 13144163 >seq10 Length=33665772 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 11198206 AAAAAAAATCTCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 11198265 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 11198266 TCACCACTATACTAC 11198280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571765714700520