Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 1e-15 seq4 98.7 1e-15 >seq10 Length=33665772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/182 (69%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || | ||| || | | ||| ||||||||||| |||||||| || || ||| Sbjct 14516066 ATATTGTAGTCCGCAAGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAAGATTAACCTT 14516125 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||| ||||| ||||| || ||||||||||| |||| Sbjct 14516126 TGCTGGTCCGGTGGAATACCCTCTTTATCTTGAATTTTAGCTTTCACATTATCAATAGTA 14516185 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || ||| ||| ||||| || ||||| || || || || | || ||||||||||||||| Sbjct 14516186 TCGGAAGATTCAACTTCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTAATGAATATTTGC 14516245 Query 146276 AT 146277 || Sbjct 14516246 AT 14516247 >seq4 Length=30051516 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| ||| || | |||| ||| | || || ||||| || || || |||| Sbjct 3354433 TTCCACCCTGAAGCCTCAGAACCAGATGAAGTGTCGACTCTTTCTGGATGTTGTAGTCTG 3354374 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||||||| ||| || ||||| || ||||||||||||||||| ||||||||||| | Sbjct 3354373 CAAGAGTTCTGCCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGGG 3354314 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||| || || || || Sbjct 3354313 CTATTCCCTCCTTGTCCTG 3354295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743458934273280