Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 3e-14 seq11 91.5 3e-13 >seq6 Length=34899179 Score = 95.1 bits (104), Expect = 3e-14 Identities = 298/453 (66%), Gaps = 14/453 (3%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| | || || ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 4329024 GTACTCACCGACCCTTTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGTTCCAT 4328965 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | ||||| ||| |||| |||||| ||| | Sbjct 4328964 CCAGTCGAAAGGGTTGGAGACCCCGTACATTTTGCCGTAGCCCAGCGCCCCGAGCAGGCG 4328905 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || ||||||| |||||||| ||||| | | || |||| ||||||||| Sbjct 4328904 GTCGGCGACAAACTCGATGTACTGGCTCATGAGGACACCATTCATCCCGACGAGCGCGAC 4328845 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| || | || || | | ||| || | ||| | | ||| |||| | || | Sbjct 4328844 GGGCAG-GGCGTCGCAGACGAACTCCCGCTCGATGTCAACGGCGTCGGCAACGATAGCCC 4328786 Query 157497 GAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGC--CGT 157554 | || | ||| | ||| | || ||| | ||| | ||| | |||| || Sbjct 4328785 GGACCTTGTCCTCGGAGAGCTTGTTGCGGAGGAGGCCGTAAAGGAG---GCAAGCAAAGT 4328729 Query 157555 GGC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACC---CTTGA 157610 || |||||| || ||||| | || |||||| ||| | ||| | | ||| | ||| Sbjct 4328728 CGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGA 4328669 Query 157611 ACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCT 157670 | | |||||||| |||||| ||||||||||||| || || ||| | ||||| Sbjct 4328668 --GGCCG-CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATGCCCT 4328612 Query 157671 CCAGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | | |||| |||| |||| || | ||| |||| Sbjct 4328611 CGACGCAGGCGAAGGCGACGAGTCGCTCGGCGA 4328579 >seq11 Length=25514024 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || || |||| |||| || ||||| || |||| ||||||||| | ||| | Sbjct 20143840 AGACTTTGACTATGATTATTTTGGATTTAAAACTCTTGAGAGGTCGTATCTCTTAAAAGT 20143899 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | ||||||| | ||||| | || |||||||||||| |||| ||||| || || || Sbjct 20143900 TTGTGGCAAGGTAGTGGAGAGGCCACAACACATGTTGATGAGAGTAGCTGTTGGAATCCA 20143959 Query 248928 CAAGGATGACATAGA 248942 ||| |||||||| || Sbjct 20143960 CAAAGATGACATTGA 20143974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073666533349312