Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq8 122 7e-23 seq9 118 8e-22 seq1 109 4e-19 seq3 100 2e-16 seq6 98.7 8e-16 seq5 89.7 4e-13 seq11 84.2 2e-11 >seq8 Length=35439739 Score = 122 bits (134), Expect = 7e-23 Identities = 154/209 (74%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| |||||| |||||||||||||||||||||| || || | || ||||| || Sbjct 26900832 GTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTG 26900891 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| || | ||||| || || || || | |||||||||||| ||| || Sbjct 26900892 CTTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTT 26900951 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 ||| | || | || | ||||| |||||||| | ||| |||||||| |||| Sbjct 26900952 GGCCTTCA-CGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCG 26901010 Query 45312 TCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| |||||||| ||||| ||||| ||| Sbjct 26901011 TCAGCGTCTTCACGAAGATCTGCATCTTG 26901039 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || || | ||| | |||| || || ||| ||||||||||||||| |||||| | Sbjct 1222288 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222347 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || || || || || ||||| || || | || ||| ||||| ||||| Sbjct 1222348 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1222407 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || |||||| | | ||||| | ||| ||| Sbjct 1222408 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACC 1222467 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| || ||||||||||||||||| ||||| Sbjct 1222468 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||||||| ||||| ||| ||| |||| |||| || Sbjct 1222078 ACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCCTCG 1222137 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || ||| ||||| || || | ||||||||||||| Sbjct 1222138 AGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGG 1222197 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| |||||| | | |||| | ||| ||||||| ||| || ||||| Sbjct 1222198 ATCTTTGCCTTAACGTTGTCGATCGTGTCAGAGCTCTCAACCTCCAGGGTGATGGTCTTT 1222257 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 1222258 CCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || |||||| ||||||||| |||||||| ||| || ||| |||| || Sbjct 4858205 ACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCG 4858146 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || || | || || ||||| || || | |||||||||||| Sbjct 4858145 AGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 4858086 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| | ||| ||||||| |||||| ||||| Sbjct 4858085 ATCTTGGCCTTGACGTTGTCGATTGTGTCCGAGCTCTCGACCTCCAAGGTAATGGTCTTC 4858026 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || ||||||||||| ||||| |||||| Sbjct 4858025 CCAGTGAGAGTCTTCACGAAGATCTGCATG 4857996 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||||||| || ||| |||| || || || Sbjct 4857972 GTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTG 4857913 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | || || ||||| || || | |||||||||||| || || Sbjct 4857912 CTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 4857853 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| | | | |||| | || ||||||| ||| || ||||| || || Sbjct 4857852 GGCCTTAACATTGTCGATGGTGTCAGAGCTTTCGACCTCCAAGGTTATGGTCTTCCCGGT 4857793 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| Sbjct 4857792 GAGGGTCTTCACAAAGATCTGCAT 4857769 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||||||||| |||||| || ||| | || || || || Sbjct 1222539 GTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCGAGCTG 1222598 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || |||||||| |||| || ||||||||| ||||| | |||||||||||| Sbjct 1222599 CTTGCCGGCGAAGATCAGCCTCTGTTGGTCCGGAGGGATGCCCTCCTTGTCC 1222650 >seq9 Length=34148863 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||||||||||| || ||| ||| |||| ||| Sbjct 33548987 ACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCGTCCTCC 33549046 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| || || || || | |||||||||||| Sbjct 33549047 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGG 33549106 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | ||||| || ||||||||||| |||||| ||||| Sbjct 33549107 ATCTTTGCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATGGTCTTC 33549166 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| |||||||| |||||| Sbjct 33549167 CCTGTGAGCGTCTTAACAAAGATCTGCATG 33549196 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||||||||||| || ||| ||| |||| || Sbjct 33541417 ACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTCT 33541358 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | || ||| || || || || | |||||||||||| Sbjct 33541357 AGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGG 33541298 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | ||||| | ||||||||||| |||||| ||||| Sbjct 33541297 ATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGTAATGGTCTTC 33541238 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| |||||||| |||||| Sbjct 33541237 CCGGTGAGGGTCTTAACAAAGATCTGCATG 33541208 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| |||||||||||| || ||| |||| || | Sbjct 11331988 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGA---- 11332043 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 | | || ||||| || | ||| | ||||| || | | |||||| ||| || || Sbjct 11332044 TCTCCCCGCGAAGATGATACGCGGCTGGTCCGGCTGGATGTCCTCCTCCTCCTGGATCTT 11332103 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | ||||| ||||||||| | ||| |||||||||||||| Sbjct 11332104 AGCCTTCACGTTGTCGATCGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTGCCCGT 11332163 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 || |||||||||||||||||||| ||||| Sbjct 11332164 GAGGGTCTTCACAAAGATTTGCATCTTGCC 11332193 >seq1 Length=27573629 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || ||| |||| || || || Sbjct 19376119 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGCCCGTCCTCGAGCTG 19376178 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| ||||| | ||||| ||||| || || | |||||||||||| || || Sbjct 19376179 CTTCCCGGCAAATATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTT 19376238 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| | ||||||||| | ||| |||||||| || || Sbjct 19376239 CGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGT 19376298 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 || |||||||| ||||| ||||| || || Sbjct 19376299 GAGGGTCTTCACGAAGATCTGCATCTTCCC 19376328 >seq3 Length=30470407 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| || |||||||| || ||| | || || || || Sbjct 5990998 GTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGCCCATCCTCGAGCTG 5991057 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || || | ||||| ||||| || || | |||||||| ||| || || Sbjct 5991058 CTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTT 5991117 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| ||||||||| | ||| |||||||| ||||| Sbjct 5991118 GGCCTTCACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGT 5991177 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 ||||||||||| ||||| ||||| ||||| Sbjct 5991178 GAGAGTCTTCACGAAGATCTGCATCTTGCC 5991207 >seq6 Length=34899179 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||| ||||| ||||| |||| ||| | || || Sbjct 13154752 ACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGCCCATCCTCG 13154693 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | || ||||||||| || || | |||||||||||| Sbjct 13154692 AGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGT 13154633 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | ||||| | ||| ||||||| || || ||||| Sbjct 13154632 ATCTTTGCCTTCACATTGTCGATAGTGTCCGAGCTCTCAACCTCCAGAGTGATGGTCTTC 13154573 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || |||||||| |||||||| Sbjct 13154572 CCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544 >seq5 Length=29377369 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||||||| ||||||||| ||| ||| | || || Sbjct 457964 ACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCATCCTCG 457905 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || || | || ||| || || || | | ||||||||||| Sbjct 457904 AGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTGTCATGG 457845 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| |||| || | |||| | ||||||||||| ||| || || || Sbjct 457844 ATCTTTGCTTTAAGATTGGCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATGGTGTTT 457785 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || ||||| |||||||| Sbjct 457784 CCGGTGAGGGTTTTGACAAAAATTTGCAT 457756 >seq11 Length=25514024 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || || |||| || || || Sbjct 16241438 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTG 16241497 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | || || ||||| || || | || ||||||||| ||| || Sbjct 16241498 CTTGCCCGCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTT 16241557 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| | ||| || || | ||| |||||||| || || Sbjct 16241558 GGCCTTCACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGT 16241617 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||| ||||| Sbjct 16241618 GAGCGTCTTCACAAAGATCTGCAT 16241641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395040248067439