Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq8 122 7e-23
seq9 118 8e-22
seq1 109 4e-19
seq3 100 2e-16
seq6 98.7 8e-16
seq5 89.7 4e-13
seq11 84.2 2e-11
>seq8
Length=35439739
Score = 122 bits (134), Expect = 7e-23
Identities = 154/209 (74%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| |||||| |||||||||||||||||||||| || || | || ||||| ||
Sbjct 26900832 GTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTG 26900891
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||||||||| || | ||||| || || || || | |||||||||||| ||| ||
Sbjct 26900892 CTTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTT 26900951
Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311
||| | || | || | ||||| |||||||| | ||| |||||||| ||||
Sbjct 26900952 GGCCTTCA-CGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCG 26901010
Query 45312 TCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|||| |||||||| ||||| ||||| |||
Sbjct 26901011 TCAGCGTCTTCACGAAGATCTGCATCTTG 26901039
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| || || | ||| | |||| || || ||| ||||||||||||||| |||||| |
Sbjct 1222288 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222347
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
| ||| | || || || || || ||||| || || | || ||| ||||| |||||
Sbjct 1222348 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1222407
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| |||||||||||| || || |||||| | | ||||| | ||| |||
Sbjct 1222408 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACC 1222467
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| | ||| || |||||||| || ||||||||||||||||| |||||
Sbjct 1222468 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| |||||||||||| ||||| ||| ||| |||| |||| ||
Sbjct 1222078 ACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCCTCG 1222137
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | || ||| ||||| || || | |||||||||||||
Sbjct 1222138 AGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGG 1222197
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| |||||| | | |||| | ||| ||||||| ||| || |||||
Sbjct 1222198 ATCTTTGCCTTAACGTTGTCGATCGTGTCAGAGCTCTCAACCTCCAGGGTGATGGTCTTT 1222257
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || ||||| || ||||| |||||
Sbjct 1222258 CCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| || |||||| ||||||||| |||||||| ||| || ||| |||| ||
Sbjct 4858205 ACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCG 4858146
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || || || || | || || ||||| || || | ||||||||||||
Sbjct 4858145 AGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGG 4858086
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | ||||| | ||| ||||||| |||||| |||||
Sbjct 4858085 ATCTTGGCCTTGACGTTGTCGATTGTGTCCGAGCTCTCGACCTCCAAGGTAATGGTCTTC 4858026
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || ||||||||||| ||||| ||||||
Sbjct 4858025 CCAGTGAGAGTCTTCACGAAGATCTGCATG 4857996
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| |||||||||||||||||||||| || ||| |||| || || ||
Sbjct 4857972 GTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGAGCTG 4857913
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || || | || || ||||| || || | |||||||||||| || ||
Sbjct 4857912 CTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 4857853
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
|||||| | | | |||| | || ||||||| ||| || ||||| || ||
Sbjct 4857852 GGCCTTAACATTGTCGATGGTGTCAGAGCTTTCGACCTCCAAGGTTATGGTCTTCCCGGT 4857793
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||||||||| |||||
Sbjct 4857792 GAGGGTCTTCACAAAGATCTGCAT 4857769
Score = 86.0 bits (94), Expect = 5e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||||||||| |||||| || ||| | || || || ||
Sbjct 1222539 GTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCGAGCTG 1222598
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| |||||||| |||| || ||||||||| ||||| | ||||||||||||
Sbjct 1222599 CTTGCCGGCGAAGATCAGCCTCTGTTGGTCCGGAGGGATGCCCTCCTTGTCC 1222650
>seq9
Length=34148863
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||||||||||| || ||| ||| |||| |||
Sbjct 33548987 ACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCGTCCTCC 33549046
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| || ||| || || || || | ||||||||||||
Sbjct 33549047 AGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGG 33549106
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| ||| || | | ||||| || ||||||||||| |||||| |||||
Sbjct 33549107 ATCTTTGCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATGGTCTTC 33549166
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || || ||||| |||||||| ||||||
Sbjct 33549167 CCTGTGAGCGTCTTAACAAAGATCTGCATG 33549196
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||||||||||| || ||| ||| |||| ||
Sbjct 33541417 ACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTCT 33541358
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| || | || ||| || || || || | ||||||||||||
Sbjct 33541357 AGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGG 33541298
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | ||||| | ||||||||||| |||||| |||||
Sbjct 33541297 ATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGTAATGGTCTTC 33541238
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || || ||||| |||||||| ||||||
Sbjct 33541237 CCGGTGAGGGTCTTAACAAAGATCTGCATG 33541208
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| |||||||||||| || ||| |||| || |
Sbjct 11331988 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGA---- 11332043
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
| | || ||||| || | ||| | ||||| || | | |||||| ||| || ||
Sbjct 11332044 TCTCCCCGCGAAGATGATACGCGGCTGGTCCGGCTGGATGTCCTCCTCCTCCTGGATCTT 11332103
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | ||||| ||||||||| | ||| ||||||||||||||
Sbjct 11332104 AGCCTTCACGTTGTCGATCGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTGCCCGT 11332163
Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGCC 45342
|| |||||||||||||||||||| |||||
Sbjct 11332164 GAGGGTCTTCACAAAGATTTGCATCTTGCC 11332193
>seq1
Length=27573629
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || ||| |||| || || ||
Sbjct 19376119 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGCCCGTCCTCGAGCTG 19376178
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| ||||| ||||| | ||||| ||||| || || | |||||||||||| || ||
Sbjct 19376179 CTTCCCGGCAAATATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTT 19376238
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | ||||| | ||||||||| | ||| |||||||| || ||
Sbjct 19376239 CGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGT 19376298
Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGCC 45342
|| |||||||| ||||| ||||| || ||
Sbjct 19376299 GAGGGTCTTCACGAAGATCTGCATCTTCCC 19376328
>seq3
Length=30470407
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| || |||||||| || ||| | || || || ||
Sbjct 5990998 GTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGCCCATCCTCGAGCTG 5991057
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| ||||| || || | ||||| ||||| || || | |||||||| ||| || ||
Sbjct 5991058 CTTCCCGGCAAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTT 5991117
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | ||||| ||||||||| | ||| |||||||| |||||
Sbjct 5991118 GGCCTTCACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGT 5991177
Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGCC 45342
||||||||||| ||||| ||||| |||||
Sbjct 5991178 GAGAGTCTTCACGAAGATCTGCATCTTGCC 5991207
>seq6
Length=34899179
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| |||||||| ||||| ||||| |||| ||| | || ||
Sbjct 13154752 ACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGCCCATCCTCG 13154693
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | || ||||||||| || || | ||||||||||||
Sbjct 13154692 AGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGT 13154633
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| ||| || | | ||||| | ||| ||||||| || || |||||
Sbjct 13154632 ATCTTTGCCTTCACATTGTCGATAGTGTCCGAGCTCTCAACCTCCAGAGTGATGGTCTTC 13154573
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||||| || || |||||||| ||||||||
Sbjct 13154572 CCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544
>seq5
Length=29377369
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| |||||||||||| ||||||||| ||| ||| | || ||
Sbjct 457964 ACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCATCCTCG 457905
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| ||||| || || | || ||| || || || | | |||||||||||
Sbjct 457904 AGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTGTCATGG 457845
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| |||| || | |||| | ||||||||||| ||| || || ||
Sbjct 457844 ATCTTTGCTTTAAGATTGGCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATGGTGTTT 457785
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || || || ||||| ||||||||
Sbjct 457784 CCGGTGAGGGTTTTGACAAAAATTTGCAT 457756
>seq11
Length=25514024
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| ||||||||| ||||||||||| || || |||| || || ||
Sbjct 16241438 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTG 16241497
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || || | || || ||||| || || | || ||||||||| ||| ||
Sbjct 16241498 CTTGCCCGCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTT 16241557
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | ||||| | ||| || || | ||| |||||||| || ||
Sbjct 16241558 GGCCTTCACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGT 16241617
Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336
|| |||||||||||||| |||||
Sbjct 16241618 GAGCGTCTTCACAAAGATCTGCAT 16241641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395040248067439
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