Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 1e-12 seq4 82.4 6e-11 >seq5 Length=29377369 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| ||||| ||||| | ||||| ||||| || ||||| || || ||| ||| ||||| Sbjct 457752 TCCCCCCCGGAGTCTCATTACCAAATGAAGGGTAGATTCCTTGTGGATGGAGTAATCGGC 457693 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||| ||||| ||| |||| || ||||| || ||||| || Sbjct 457692 TAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCACAGG 457633 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | ||| || | | | ||||| | |||| Sbjct 457632 GATACCCTCCTTGTCTTGCATCTTAGCCTTCACATTCTCGATGGTGTCCGAGCTCTCGAC 457573 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||| || |||||||||| | || || | || |||||||| Sbjct 457572 CTCGAGGGTGGTGGTTTTGCCGGTAAGGGTCTTGATGAAGATTTGCAT 457525 >seq4 Length=30051516 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| ||| | || || || |||| |||||||| || ||||| || ||||||||||| || Sbjct 3354432 TCCACCCTGAAGCCTCAGAACCAGATGAAGTGTCGACTCTTTCTGGATGTTGTAGTCTGC 3354373 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC 18212 | ||| | | |||||||||||| || || ||| | || | ||| || |||||| Sbjct 3354372 AAGAGTTCTGCCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCC 3354318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379310439791955