Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq9 165 7e-36
seq6 165 7e-36
seq8 111 1e-19
seq11 104 2e-17
seq1 89.7 5e-13
seq4576 87.8 2e-12
seq3 82.4 7e-11
>seq9
Length=34148863
Score = 165 bits (182), Expect = 7e-36
Identities = 403/605 (67%), Gaps = 7/605 (1%)
Strand=Plus/Plus
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || |||||||| |||||||| || || | |||||| | | || |
Sbjct 33079130 CACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCGC 33079189
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| | || || || | | ||||| | ||| ||||| || || | |||||
Sbjct 33079190 TTCATGCGCGACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATC 33079249
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866
|| ||| | || || || ||||| || || ||| |||| || ||||| |||||| ||||
Sbjct 33079250 GAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGAC 33079309
Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926
|| || | | || ||| |||| ||||| || | ||||| ||||| ||||| ||
Sbjct 33079310 GACAAGTATCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGAC 33079369
Query 57927 TGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTC 57986
||| | | ||||| | | || | | | ||||||||| | || | || |||
Sbjct 33079370 TGGGCCCTTCGCTGGATCGATTCCTCC---GGCTCCTTCGCCGAGCGCCTCGTTGCCTTC 33079426
Query 57987 GCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAA 58045
||| |||||| || || ||||| || || ||| |||| | || || ||| | |||||
Sbjct 33079427 GCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGCG-CTATCTTCTGGCTCAAGAA 33079485
Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105
||||||||| ||||||||||| || || |||||| | || || ||||||||||| ||
Sbjct 33079486 ACGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCT 33079545
Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG-ACGCGGGATC 58164
||| || || || ||||| | ||| | | | ||| || | | || || | |
Sbjct 33079546 CCACTGCGACTTCGCCTGCCTCCTCTACAGCCTCCTCCGCAACAAGCTGTCCGAGGAAGC 33079605
Query 58165 GCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCC 58224
| || || || | | || || || | ||||| ||||| ||| ||| || |
Sbjct 33079606 G-GTCCGGGCAATCGTTGCGGACGCTGTTGACATCGAGCGGGAGTTCGTCTGCGACGCAC 33079664
Query 58225 TACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTG 58284
| || || || | |||| |||||| |||| | ||| ||||||| ||||| || |
Sbjct 33079665 TCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCGTGG 33079724
Query 58285 CCGAC 58289
|||||
Sbjct 33079725 CCGAC 33079729
>seq6
Length=34899179
Score = 165 bits (182), Expect = 7e-36
Identities = 303/441 (69%), Gaps = 5/441 (1%)
Strand=Plus/Plus
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || ||||| ||||| ||||| || || || |||||| ||| || |
Sbjct 4328305 CACGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCCGCCCGC 4328364
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| | || || ||| | | ||||| | ||| ||||| || || | || ||
Sbjct 4328365 TTCATGCGCGACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAATC 4328424
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866
|| ||| | || || || ||||| || || || ||||||||||| | |||||| ||||
Sbjct 4328425 GAGAACATCCACTCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCGAC 4328484
Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926
| ||| | | || ||| |||||||||| || | || || ||||| |||||| ||
Sbjct 4328485 GTGAAGTTTCGCCTCTTCCACGCGATCGACACCGTCCCTGCCGTCGCCCGGAAGGCCGAA 4328544
Query 57927 TGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTC 57986
||| | || ||||||| | | | | | | ||||||||| | || |||| |||
Sbjct 4328545 TGGGCTCTCCAATGGATTGA---GTCTTCCGGCTCCTTCGCCGAGCGACTCGTCGCCTTC 4328601
Query 57987 GCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAA 58045
||| |||||| || || || || || ||| ||| ||| || || || ||| | |||||
Sbjct 4328602 GCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCAAGAA 4328660
Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105
|||||||| |||||||| || || || ||||||| | || || || |||||||| ||
Sbjct 4328661 GCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCT 4328720
Query 58106 CCATACTGATTTTGCGTGCCT 58126
|| || ||||| |||||
Sbjct 4328721 TCACTGCGACTTTGCTTGCCT 4328741
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || || || || || || || ||||| | || ||||| ||
Sbjct 13154544 ATGCAAATTTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTGGAGGTTGAGAGCTCG 13154603
Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| | || || || || ||| ||||||||| || | || || |||||
Sbjct 13154604 GACACTATCGACAATGTGAAGGCAAAG-ATACAGGACAAGGAGGGAATCCCACCAGACCA 13154662
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | ||||| || || || || ||| | || || || || || |||||
Sbjct 13154663 ACAGAGGCTAATCTTTGCGGGTAAGCAGCTCGAGGATGGGCGCACACTGGCAGACTATAA 13154722
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||| || || ||||| |||||||| ||||| |||
Sbjct 13154723 CATCCAGAAGGAATCCACTCTTCACCTGGTCCTT 13154756
>seq8
Length=35439739
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||||| || ||||| || |||||| |||| || || ||
Sbjct 1222514 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 1222455
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| |||| | | | ||| | ||||||||| ||| | || || |||||
Sbjct 1222454 GACACGATCGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCTCCGGACCA 1222396
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || || ||||| ||| | || || || || ||| |||||
Sbjct 1222395 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAA 1222336
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||| || || || || ||||||||||| || ||||| ||||| ||||
Sbjct 1222335 CATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGGTA 1222286
Score = 98.7 bits (108), Expect = 9e-16
Identities = 167/242 (69%), Gaps = 4/242 (2%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| ||||| ||||| || || ||||||||| |||| || ||| ||
Sbjct 26901038 AAGATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACGATCACCCTCGAGGTGGAATCG 26900979
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| | || | || || | || ||||||||| ||| | ||||| ||
Sbjct 26900978 TCGGACACGATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCGGAT 26900919
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
||||||||||| || ||||| || || ||| |||| || || | ||| ||
Sbjct 26900918 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGAACCCTCGCCGACTAC 26900859
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425
|||||||| || || || || || || || || || | || | |||||| |||||
Sbjct 26900858 AACATTCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGCGGTGCCAAGAAG 26900799
Query 31426 CG 31427
||
Sbjct 26900798 CG 26900797
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| || || || || ||||| || |||||| | || |||||| | |||
Sbjct 1223457 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTAGAGGTTGAATCCTCC 1223398
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || | || |||||||| || | || |||||||||
Sbjct 1223397 GACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCCGACCAG 1223338
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || |||||||| || ||| | |||||| || || ||| ||||||
Sbjct 1223337 CAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTATAAC 1223278
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || || || || || || ||
Sbjct 1223277 ATTCAGAAGGAGTCCACCCTCCACCTCGTGCT 1223246
Score = 82.4 bits (90), Expect = 7e-11
Identities = 114/160 (71%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| ||||| || ||||| ||||| || || || || || |||||| |||| || || |
Sbjct 32122228 AAAGATGCAGATCTTCGTGAAGACCCTTACGGGGAAGACAATCACCCTCGAGGTGGAGTC 32122287
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
|| |||| |||| | ||||| | || |||||||||||| | ||||| ||
Sbjct 32122288 CTCGGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGA 32122347
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
||||||| | || || ||||| || || ||| | || |||
Sbjct 32122348 CCAGCAGAGGCTCATCTTCGCCGGGAAGCAGCTCGAGGAC 32122387
>seq11
Length=25514024
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||| |||| || || ||||||||| | || || || ||||
Sbjct 15140937 ATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACCCTTGAGGTGGAGTCGTCG 15140878
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || || ||||||||| ||| | ||||| ||||||
Sbjct 15140877 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 15140818
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || ||||| || || ||| |||| ||| || | ||| ||||||
Sbjct 15140817 CAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAAC 15140758
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || || || || || ||||| ||
Sbjct 15140757 ATCCAGAAGGAGTCTACCCTCCACCTGGTGCT 15140726
Score = 82.4 bits (90), Expect = 7e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 23789 GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCG 23848
|||| |||| ||| || | ||| | | |||||||| ||| ||| || || | ||
Sbjct 20144004 GACAACAGATGGTATGTTCCAATGACAGAGTCAATGTCATCTTTGTGGATTCCAACAGCT 20143945
Query 23849 ACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908
|| | ||||| ||||| ||| || ||||| || ||| || ||| || |||||
Sbjct 20143944 ACTCTCATCAACATGTGTTGTGGCCTCTCCACTACCTTGCCACAAACTTTTAAGAGATAC 20143885
Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958
|| | | | ||||||||||||||||| ||||||| |||||| |||||
Sbjct 20143884 GACCTCTCAAGAGTTTTAAATCCAAAATAATCATAGTCAAAGTCTCGATC 20143835
>seq1
Length=27573629
Score = 89.7 bits (98), Expect = 5e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| ||||| || || || || ||||||||| |||| || || |
Sbjct 19376325 AAGATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCT 19376266
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| |||| | ||||| || || ||||||||| || | ||||| |||
Sbjct 19376265 TCGGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGAC 19376206
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|||||||| || ||||| || || || ||| | || |||
Sbjct 19376205 CAGCAGCGCCTCATATTTGCCGGGAAGCAGCTCGAGGAC 19376167
>seq4576
Length=2771
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| || || || ||||| |||||| |||| || ||| |||
Sbjct 2491 ATGCAGATCTTTGTTAAGACGCTCACTGGAAAAACCATCACCCTCGAGGTCGAAAGCTCC 2550
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| | || |||||| || ||| | || |||||||||
Sbjct 2551 GACACCATCGACAACGTCAAAGCTAAGATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 2610
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTAT 31369
|| | || || ||||| ||||| ||| | ||| | | || | || || | || ||
Sbjct 2611 CAAAGGCTCATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACG-CT-TGCG-GACTAC 2667
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || ||||| ||||| || || || || ||
Sbjct 2668 AACATCCAGAAAGAGTCGACGCTCCACCTCGTCCT 2702
>seq3
Length=30470407
Score = 82.4 bits (90), Expect = 7e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| |||||||| || || || ||||||||| |||| || || ||
Sbjct 5991204 AAGATGCAGATCTTCGTGAAGACTCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCG 5991145
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| |||| | || || | || ||| ||||| ||| | ||||| |||
Sbjct 5991144 TCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGAC 5991085
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || || || || || ||| | || ||
Sbjct 5991084 CAGCAGCGCCTCATCTTTGCCGGGAAGCAGCTCGAGGA 5991047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445725952271280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |