Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9 165 7e-36 seq6 165 7e-36 seq8 111 1e-19 seq11 104 2e-17 seq1 89.7 5e-13 seq4576 87.8 2e-12 seq3 82.4 7e-11 >seq9 Length=34148863 Score = 165 bits (182), Expect = 7e-36 Identities = 403/605 (67%), Gaps = 7/605 (1%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || |||||||| |||||||| || || | |||||| | | || | Sbjct 33079130 CACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCGC 33079189 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || | || || || | | ||||| | ||| ||||| || || | ||||| Sbjct 33079190 TTCATGCGCGACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATC 33079249 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || ||||| || || ||| |||| || ||||| |||||| |||| Sbjct 33079250 GAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGAC 33079309 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926 || || | | || ||| |||| ||||| || | ||||| ||||| ||||| || Sbjct 33079310 GACAAGTATCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGAC 33079369 Query 57927 TGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTC 57986 ||| | | ||||| | | || | | | ||||||||| | || | || ||| Sbjct 33079370 TGGGCCCTTCGCTGGATCGATTCCTCC---GGCTCCTTCGCCGAGCGCCTCGTTGCCTTC 33079426 Query 57987 GCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAA 58045 ||| |||||| || || ||||| || || ||| |||| | || || ||| | ||||| Sbjct 33079427 GCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGCG-CTATCTTCTGGCTCAAGAA 33079485 Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105 ||||||||| ||||||||||| || || |||||| | || || ||||||||||| || Sbjct 33079486 ACGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCT 33079545 Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG-ACGCGGGATC 58164 ||| || || || ||||| | ||| | | | ||| || | | || || | | Sbjct 33079546 CCACTGCGACTTCGCCTGCCTCCTCTACAGCCTCCTCCGCAACAAGCTGTCCGAGGAAGC 33079605 Query 58165 GCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCC 58224 | || || || | | || || || | ||||| ||||| ||| ||| || | Sbjct 33079606 G-GTCCGGGCAATCGTTGCGGACGCTGTTGACATCGAGCGGGAGTTCGTCTGCGACGCAC 33079664 Query 58225 TACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTG 58284 | || || || | |||| |||||| |||| | ||| ||||||| ||||| || | Sbjct 33079665 TCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCGTGG 33079724 Query 58285 CCGAC 58289 ||||| Sbjct 33079725 CCGAC 33079729 >seq6 Length=34899179 Score = 165 bits (182), Expect = 7e-36 Identities = 303/441 (69%), Gaps = 5/441 (1%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || ||||| ||||| ||||| || || || |||||| ||| || | Sbjct 4328305 CACGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCCGCCCGC 4328364 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || | || || ||| | | ||||| | ||| ||||| || || | || || Sbjct 4328365 TTCATGCGCGACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAATC 4328424 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || || ||||| || || || ||||||||||| | |||||| |||| Sbjct 4328425 GAGAACATCCACTCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCGAC 4328484 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926 | ||| | | || ||| |||||||||| || | || || ||||| |||||| || Sbjct 4328485 GTGAAGTTTCGCCTCTTCCACGCGATCGACACCGTCCCTGCCGTCGCCCGGAAGGCCGAA 4328544 Query 57927 TGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTC 57986 ||| | || ||||||| | | | | | | ||||||||| | || |||| ||| Sbjct 4328545 TGGGCTCTCCAATGGATTGA---GTCTTCCGGCTCCTTCGCCGAGCGACTCGTCGCCTTC 4328601 Query 57987 GCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAA 58045 ||| |||||| || || || || || ||| ||| ||| || || || ||| | ||||| Sbjct 4328602 GCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCAAGAA 4328660 Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105 |||||||| |||||||| || || || ||||||| | || || || |||||||| || Sbjct 4328661 GCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCT 4328720 Query 58106 CCATACTGATTTTGCGTGCCT 58126 || || ||||| ||||| Sbjct 4328721 TCACTGCGACTTTGCTTGCCT 4328741 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || || || ||||| | || ||||| || Sbjct 13154544 ATGCAAATTTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTGGAGGTTGAGAGCTCG 13154603 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | || || || || ||| ||||||||| || | || || ||||| Sbjct 13154604 GACACTATCGACAATGTGAAGGCAAAG-ATACAGGACAAGGAGGGAATCCCACCAGACCA 13154662 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | ||||| || || || || ||| | || || || || || ||||| Sbjct 13154663 ACAGAGGCTAATCTTTGCGGGTAAGCAGCTCGAGGATGGGCGCACACTGGCAGACTATAA 13154722 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || ||||| |||||||| ||||| ||| Sbjct 13154723 CATCCAGAAGGAATCCACTCTTCACCTGGTCCTT 13154756 >seq8 Length=35439739 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || ||||| || |||||| |||| || || || Sbjct 1222514 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 1222455 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| |||| | | | ||| | ||||||||| ||| | || || ||||| Sbjct 1222454 GACACGATCGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCTCCGGACCA 1222396 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | || || || || ||| ||||| Sbjct 1222395 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAA 1222336 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || || || || ||||||||||| || ||||| ||||| |||| Sbjct 1222335 CATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGGTA 1222286 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| || || ||||||||| |||| || ||| || Sbjct 26901038 AAGATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACGATCACCCTCGAGGTGGAATCG 26900979 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | || | || || | || ||||||||| ||| | ||||| || Sbjct 26900978 TCGGACACGATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCGGAT 26900919 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| || || ||| |||| || || | ||| || Sbjct 26900918 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGAACCCTCGCCGACTAC 26900859 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 |||||||| || || || || || || || || || | || | |||||| ||||| Sbjct 26900858 AACATTCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGCGGTGCCAAGAAG 26900799 Query 31426 CG 31427 || Sbjct 26900798 CG 26900797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || ||||| || |||||| | || |||||| | ||| Sbjct 1223457 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTAGAGGTTGAATCCTCC 1223398 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || |||||||| || | || ||||||||| Sbjct 1223397 GACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCCGACCAG 1223338 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||| || ||| | |||||| || || ||| |||||| Sbjct 1223337 CAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTATAAC 1223278 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || || || Sbjct 1223277 ATTCAGAAGGAGTCCACCCTCCACCTCGTGCT 1223246 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||| || || || || || |||||| |||| || || | Sbjct 32122228 AAAGATGCAGATCTTCGTGAAGACCCTTACGGGGAAGACAATCACCCTCGAGGTGGAGTC 32122287 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | ||||| | || |||||||||||| | ||||| || Sbjct 32122288 CTCGGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCGCCGGA 32122347 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||| | || || ||||| || || ||| | || ||| Sbjct 32122348 CCAGCAGAGGCTCATCTTCGCCGGGAAGCAGCTCGAGGAC 32122387 >seq11 Length=25514024 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || || ||||||||| | || || || |||| Sbjct 15140937 ATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACCCTTGAGGTGGAGTCGTCG 15140878 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||| ||| | ||||| |||||| Sbjct 15140877 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 15140818 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || || ||| |||| ||| || | ||| |||||| Sbjct 15140817 CAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAAC 15140758 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || ||||| || Sbjct 15140757 ATCCAGAAGGAGTCTACCCTCCACCTGGTGCT 15140726 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 23789 GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCG 23848 |||| |||| ||| || | ||| | | |||||||| ||| ||| || || | || Sbjct 20144004 GACAACAGATGGTATGTTCCAATGACAGAGTCAATGTCATCTTTGTGGATTCCAACAGCT 20143945 Query 23849 ACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATAT 23908 || | ||||| ||||| ||| || ||||| || ||| || ||| || ||||| Sbjct 20143944 ACTCTCATCAACATGTGTTGTGGCCTCTCCACTACCTTGCCACAAACTTTTAAGAGATAC 20143885 Query 23909 GAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 || | | | ||||||||||||||||| ||||||| |||||| ||||| Sbjct 20143884 GACCTCTCAAGAGTTTTAAATCCAAAATAATCATAGTCAAAGTCTCGATC 20143835 >seq1 Length=27573629 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || || || ||||||||| |||| || || | Sbjct 19376325 AAGATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCT 19376266 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| || || ||||||||| || | ||||| ||| Sbjct 19376265 TCGGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGAC 19376206 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || ||||| || || || ||| | || ||| Sbjct 19376205 CAGCAGCGCCTCATATTTGCCGGGAAGCAGCTCGAGGAC 19376167 >seq4576 Length=2771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || ||||| |||||| |||| || ||| ||| Sbjct 2491 ATGCAGATCTTTGTTAAGACGCTCACTGGAAAAACCATCACCCTCGAGGTCGAAAGCTCC 2550 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || |||||| || ||| | || ||||||||| Sbjct 2551 GACACCATCGACAACGTCAAAGCTAAGATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 2610 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTAT 31369 || | || || ||||| ||||| ||| | ||| | | || | || || | || || Sbjct 2611 CAAAGGCTCATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACG-CT-TGCG-GACTAC 2667 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| ||||| || || || || || Sbjct 2668 AACATCCAGAAAGAGTCGACGCTCCACCTCGTCCT 2702 >seq3 Length=30470407 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| |||||||| || || || ||||||||| |||| || || || Sbjct 5991204 AAGATGCAGATCTTCGTGAAGACTCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCG 5991145 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | || || | || ||| ||||| ||| | ||||| ||| Sbjct 5991144 TCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGAC 5991085 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || || || || ||| | || || Sbjct 5991084 CAGCAGCGCCTCATCTTTGCCGGGAAGCAGCTCGAGGA 5991047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445725952271280