Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 5e-14 >seq9 Length=34148863 Score = 93.3 bits (102), Expect = 5e-14 Identities = 243/368 (66%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||| || || |||||||| | || | ||||| || || ||||| Sbjct 1096992 CAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 1096933 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||| ||||| || |||||||| || | ||| || || || |||||| Sbjct 1096932 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAG 1096873 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA---TGT 33758 ||||| || || || ||||| | || || ||| || ||| | || | | | Sbjct 1096872 ATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCA-AAC--GAGCCGGAAGATTCA 1096816 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| |||||||| ||| | || | ||| || ||||| Sbjct 1096815 ATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGG 1096756 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 |||||| | | || || | | || || | || || |||| | || ||||| Sbjct 1096755 AAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACATC 1096696 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || || ||||| || ||||| ||||| || |||||||| | |||||||| | | Sbjct 1096695 TCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGC 1096636 Query 33939 TGCACTTC 33946 || || || Sbjct 1096635 TGGACGTC 1096628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629760451925520