Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq8 98.7 1e-15
seq11 93.3 4e-14
seq5 91.5 1e-13
seq9 86.0 6e-12
>seq8
Length=35439739
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || ||||||||||| ||| || |||| |||||||||||| ||||||
Sbjct 1223261 GTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCA 1223320
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||| || | ||||| ||||| || || || || ||||| ||| || ||
Sbjct 1223321 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTA 1223380
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||||| || || ||||| | ||| | |||||||| || | |||
Sbjct 1223381 ACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTT 1223440
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 1223441 TTCACGAAGATCTGCAT 1223457
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626
||| ||||| || || ||||| |||||| | |||| ||||||||||||||| ||
Sbjct 4858194 CGTGGACTCCTTCTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCGAGCTGTTTGCC 4858135
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
||| |||| || | |||||| || || || ||||| || ||||| ||| || ||
Sbjct 4858134 TGCAAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 4858075
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | |||||| | | ||| ||||| | ||| | ||||| || || | ||
Sbjct 4858074 GACGTTGTCGATTGTGTCCGAGCTCTCGACCTCCAAGGTAATGGTCTTCCCAGTGAGAGT 4858015
Query 139747 TTTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 4858014 CTTCACGAAGATCTGCAT 4857997
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| || ||||| || ||||||||||| ||| || |||| || ||||||||
Sbjct 1222312 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGC 1222371
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
|| || ||| |||| || | ||||| || ||||| ||||| || ||||| ||| ||
Sbjct 1222372 TTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTG 1222431
Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741
|| | | || | ||||| | | ||| ||||| | ||| | |||||||||||
Sbjct 1222432 GCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTG 1222491
Query 139742 AACGTTTTTACGAATATTTGCATA 139765
| || || || || || ||||||
Sbjct 1222492 AGAGTCTTCACAAAGATCTGCATA 1222515
>seq11
Length=25514024
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| || | || | || | ||| | |||||||| || || |||||||| |||
Sbjct 15140710 GCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGC 15140769
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| ||| || ||||| || || || |||| || || ||||| || || ||
Sbjct 15140770 GAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 15140829
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
||||| || ||||| ||| || || | | || | ||||| | | ||||||
Sbjct 15140830 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCCAC 15140889
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| ||| | |||||| || ||||| || || ||||| || ||||||
Sbjct 15140890 CTCAAGGGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATA 15140938
>seq5
Length=29377369
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || | || | ||| | ||||| || || || || |||||| | || |||
Sbjct 457985 TGGCCACCACGGAGTCGGAGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCG 457926
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|| |||| || ||||||||||| || ||| |||| || | |||||||| ||
Sbjct 457925 TCCAGAGTGCGGCCATCCTCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGT 457866
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
| ||||| || ||||| ||| ||| ||| || | | | ||||| | | ||||
Sbjct 457865 GAGATGCCCTCCTTGTCATGGATCTTTGCTTTAAGATTGGCGATCGTGTCTGAGCTCTCC 457806
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | ||| | || || ||||| | ||||| || || ||||||||
Sbjct 457805 ACCTCCAGGGTGATGGTGTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 457756
>seq9
Length=34148863
Score = 86.0 bits (94), Expect = 6e-12
Identities = 131/184 (71%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||||| |||||||| || |||||||| ||||| || |||| || || |||||
Sbjct 33549220 GTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTG 33549279
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| |||||| |||| || | |||||| || || || || || || ||||| ||| | |
Sbjct 33549280 CTTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGGGGAATACCCTCCTTGTCC-TGAATCT 33549338
Query 139681 TTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| | |||| | || | ||||| | | ||||||||||| ||| | ||||| ||||
Sbjct 33549339 TGGCCTTTACATTGTCGATGGTGTCCGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCGG 33549398
Query 139740 TCAA 139743
||||
Sbjct 33549399 TCAA 33549402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496018988392800
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