Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 1e-15 seq11 93.3 4e-14 seq5 91.5 1e-13 seq9 86.0 6e-12 >seq8 Length=35439739 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| ||| || |||| |||||||||||| |||||| Sbjct 1223261 GTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCA 1223320 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| ||||| || || || || ||||| ||| || || Sbjct 1223321 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTA 1223380 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| || || ||||| | ||| | |||||||| || | ||| Sbjct 1223381 ACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTT 1223440 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1223441 TTCACGAAGATCTGCAT 1223457 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| ||||| || || ||||| |||||| | |||| ||||||||||||||| || Sbjct 4858194 CGTGGACTCCTTCTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCGAGCTGTTTGCC 4858135 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||| || | |||||| || || || ||||| || ||||| ||| || || Sbjct 4858134 TGCAAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 4858075 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | |||||| | | ||| ||||| | ||| | ||||| || || | || Sbjct 4858074 GACGTTGTCGATTGTGTCCGAGCTCTCGACCTCCAAGGTAATGGTCTTCCCAGTGAGAGT 4858015 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 4858014 CTTCACGAAGATCTGCAT 4857997 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || ||||||||||| ||| || |||| || |||||||| Sbjct 1222312 TGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGC 1222371 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || ||| |||| || | ||||| || ||||| ||||| || ||||| ||| || Sbjct 1222372 TTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTG 1222431 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||| | | ||| ||||| | ||| | ||||||||||| Sbjct 1222432 GCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTG 1222491 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 | || || || || || |||||| Sbjct 1222492 AGAGTCTTCACAAAGATCTGCATA 1222515 >seq11 Length=25514024 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | |||||||| || || |||||||| ||| Sbjct 15140710 GCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGC 15140769 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| || ||||| || || || |||| || || ||||| || || || Sbjct 15140770 GAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 15140829 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| | | |||||| Sbjct 15140830 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCCAC 15140889 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | |||||| || ||||| || || ||||| || |||||| Sbjct 15140890 CTCAAGGGTGATCGTCTTCCCCGTCAAAGTCTTCACGAAGATCTGCATA 15140938 >seq5 Length=29377369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | ||| | ||||| || || || || |||||| | || ||| Sbjct 457985 TGGCCACCACGGAGTCGGAGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCG 457926 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| || ||||||||||| || ||| |||| || | |||||||| || Sbjct 457925 TCCAGAGTGCGGCCATCCTCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGT 457866 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | ||||| || ||||| ||| ||| ||| || | | | ||||| | | |||| Sbjct 457865 GAGATGCCCTCCTTGTCATGGATCTTTGCTTTAAGATTGGCGATCGTGTCTGAGCTCTCC 457806 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | || || ||||| | ||||| || || |||||||| Sbjct 457805 ACCTCCAGGGTGATGGTGTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 457756 >seq9 Length=34148863 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| |||||||| || |||||||| ||||| || |||| || || ||||| Sbjct 33549220 GTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTG 33549279 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| |||| || | |||||| || || || || || || ||||| ||| | | Sbjct 33549280 CTTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGGGGAATACCCTCCTTGTCC-TGAATCT 33549338 Query 139681 TTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | |||| | || | ||||| | | ||||||||||| ||| | ||||| |||| Sbjct 33549339 TGGCCTTTACATTGTCGATGGTGTCCGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCGG 33549398 Query 139740 TCAA 139743 |||| Sbjct 33549399 TCAA 33549402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496018988392800