Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq9 114 2e-20
seq6 87.8 3e-12
>seq9
Length=34148863
Score = 114 bits (126), Expect = 2e-20
Identities = 250/369 (68%), Gaps = 8/369 (2%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| ||||| ||||| || || |||||||| | || || ||||| || || |||||
Sbjct 1096992 CAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 1096933
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078
|| ||||| ||||| ||||| || |||||||| || | |||| || || ||||| |||||
Sbjct 1096932 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAG-CGCAGAAGGAGCCAGAGAAGAA 1096874
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA---TG 50135
|||||| || || ||| ||||| |||| || ||| || ||| | || | | |
Sbjct 1096873 GATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCA-AAC--GAGCCGGAAGATTC 1096817
Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| | ||||| |||||||| ||| | || | ||| || |||||
Sbjct 1096816 AATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCG 1096757
Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255
|||||| | | || || | | || || | || || |||| | || |||||
Sbjct 1096756 GAAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACAT 1096697
Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315
|| || || ||||| || ||||| ||||| || |||||||| | |||||||| |
Sbjct 1096696 CTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAG 1096637
Query 50316 CTGCACTTC 50324
||| || ||
Sbjct 1096636 CTGGACGTC 1096628
Score = 104 bits (114), Expect = 3e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| ||||| |||||||| || |||||||| | || ||||||||||| || |||||
Sbjct 33079563 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGG 33079504
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078
|||||||| ||||| || || || ||||| || || | |||| || || || || |||||
Sbjct 33079503 CCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAG-CGCAGAAGGAACCGGAGAAGAA 33079445
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114
||| || || || ||| |||||||| || | |||
Sbjct 33079444 GATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 33079409
>seq6
Length=34899179
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920
|| || || || |||||| ||| | | ||| ||| ||| | ||| || | ||| |||
Sbjct 13939967 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 13940026
Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980
|| | ||||| | || |||| || |||||||||||||||||||||||| || |||
Sbjct 13940027 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 13940086
Query 79981 AGATCTCTGGTTCTATGCTCCTC 80003
|| || || | ||||||||| ||
Sbjct 13940087 AGGTCCCTAGCTCTATGCTCTTC 13940109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718203626084760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |