Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9 114 2e-20 seq6 87.8 3e-12 >seq9 Length=34148863 Score = 114 bits (126), Expect = 2e-20 Identities = 250/369 (68%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||| || || |||||||| | || || ||||| || || ||||| Sbjct 1096992 CAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 1096933 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| ||||| ||||| || |||||||| || | |||| || || ||||| ||||| Sbjct 1096932 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAG-CGCAGAAGGAGCCAGAGAAGAA 1096874 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA---TG 50135 |||||| || || ||| ||||| |||| || ||| || ||| | || | | | Sbjct 1096873 GATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCA-AAC--GAGCCGGAAGATTC 1096817 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | ||||| |||||||| ||| | || | ||| || ||||| Sbjct 1096816 AATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCG 1096757 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 |||||| | | || || | | || || | || || |||| | || ||||| Sbjct 1096756 GAAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACAT 1096697 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || || ||||| || ||||| ||||| || |||||||| | |||||||| | Sbjct 1096696 CTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAG 1096637 Query 50316 CTGCACTTC 50324 ||| || || Sbjct 1096636 CTGGACGTC 1096628 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || |||||||| | || ||||||||||| || ||||| Sbjct 33079563 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGG 33079504 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| || || || ||||| || || | |||| || || || || ||||| Sbjct 33079503 CCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAG-CGCAGAAGGAACCGGAGAAGAA 33079445 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| |||||||| || | ||| Sbjct 33079444 GATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 33079409 >seq6 Length=34899179 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || || || || |||||| ||| | | ||| ||| ||| | ||| || | ||| ||| Sbjct 13939967 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 13940026 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || | ||||| | || |||| || |||||||||||||||||||||||| || ||| Sbjct 13940027 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 13940086 Query 79981 AGATCTCTGGTTCTATGCTCCTC 80003 || || || | ||||||||| || Sbjct 13940087 AGGTCCCTAGCTCTATGCTCTTC 13940109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718203626084760