Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq9 102 1e-16
seq6 87.8 2e-12
>seq9
Length=34148863
Score = 102 bits (112), Expect = 1e-16
Identities = 230/342 (67%), Gaps = 8/342 (2%)
Strand=Plus/Minus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| ||||| ||||| || || ||||| || | || | ||||| || || |||||
Sbjct 1096992 CAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 1096933
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183
|| ||||| ||||| ||||| || |||||||| |||| |||| || || ||||| |||||
Sbjct 1096932 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAG-CGCAGAAGGAGCCAGAGAAGAA 1096874
Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATG 42240
|||||| || || || ||||| | || || ||| || | |||| | |||
Sbjct 1096873 GATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGAAGATTCA-- 1096816
Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300
||||| | ||||| |||||||| ||| | || | ||| || |||||
Sbjct 1096815 -ATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCG 1096757
Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360
|||||| | | || || | | || || | || || |||| | || |||||
Sbjct 1096756 GAAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACAT 1096697
Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402
|| || || ||||| || ||||| ||||| || ||||||||
Sbjct 1096696 CTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 1096655
>seq6
Length=34899179
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003
|| || || || |||||| || | | ||| ||| |||||| || || | |||||||
Sbjct 13939967 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 13940026
Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063
|| | ||||| | | |||| || |||||||||||||||||||||||| || |||
Sbjct 13940027 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 13940086
Query 72064 AGATCTCTGGTTCTATGCTCCTC 72086
|| || || | ||||||||| ||
Sbjct 13940087 AGGTCCCTAGCTCTATGCTCTTC 13940109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671078302506840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |