Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9 102 1e-16 seq6 87.8 2e-12 >seq9 Length=34148863 Score = 102 bits (112), Expect = 1e-16 Identities = 230/342 (67%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||||| || || ||||| || | || | ||||| || || ||||| Sbjct 1096992 CAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 1096933 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||| ||||| || |||||||| |||| |||| || || ||||| ||||| Sbjct 1096932 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAG-CGCAGAAGGAGCCAGAGAAGAA 1096874 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATG 42240 |||||| || || || ||||| | || || ||| || | |||| | ||| Sbjct 1096873 GATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGAAGATTCA-- 1096816 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | ||||| |||||||| ||| | || | ||| || ||||| Sbjct 1096815 -ATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCG 1096757 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 |||||| | | || || | | || || | || || |||| | || ||||| Sbjct 1096756 GAAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACAT 1096697 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || || || ||||| || ||||| ||||| || |||||||| Sbjct 1096696 CTCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAA 1096655 >seq6 Length=34899179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || || || || |||||| || | | ||| ||| |||||| || || | ||||||| Sbjct 13939967 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 13940026 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || | ||||| | | |||| || |||||||||||||||||||||||| || ||| Sbjct 13940027 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 13940086 Query 72064 AGATCTCTGGTTCTATGCTCCTC 72086 || || || | ||||||||| || Sbjct 13940087 AGGTCCCTAGCTCTATGCTCTTC 13940109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671078302506840