Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 167 3e-36 seq9 159 5e-34 >seq6 Length=34899179 Score = 167 bits (184), Expect = 3e-36 Identities = 394/582 (68%), Gaps = 11/582 (2%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||||||||||| || | || ||||| | ||||||||||| ||||||||| | Sbjct 15336444 TGTTTCCCATCACCTACCCGTCAATCTGGGAGTTCTACAAAAAGGCCGTGGCCTCCTTCT 15336503 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| || ||||| || ||||| |||| || | | | ||| || |||| || | | Sbjct 15336504 GGACGGCGGAGGAGGTGGACTTGTCCCAGGATCTCTCCCACTGGCAGGATCGTCTGTCCG 15336563 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 |||| | || || || || | | ||||| ||||||| |||||| || |||| Sbjct 15336564 CCGACGAGCACCACTTCATCTCCCATGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCG 15336623 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC 125234 || ||| || ||| | | || ||| | || || | | |||| |||| || || Sbjct 15336624 TCCTCGAGAACCTGGCGGCCCGGTTCATGCGCGACGTCCAGC-TTCCTGAGGCC-CGCGC 15336681 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| ||| || |||||| | ||||| || ||||| ||| || | Sbjct 15336682 CTTCTACGGCTTCCAGATCGCTATCGAGAACATCCACTCTGAGATGTATTCTCTCCTCCT 15336741 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGG 125352 |||| ||||| || || | || || | || |||| | || || ||||| | Sbjct 15336742 CGACACCTACATCAAGGACCC-CGGCGAGAAGTCTCGCCTCTTCCATGCCATTGACACCG 15336800 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 | || || | ||||| | |||| | | || |||||||| | |||| Sbjct 15336801 TCCCTCCTGTCGCCCGCAAGGCCGAGTGGGCGCTACGCTGGATCGAATCCTCT--GTCT- 15336857 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGT 125471 | | |||||| | || || || |||||| ||| ||||| ||||||| || || | | Sbjct 15336858 CATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGAGTCTTCTTCTCCGGCTCCT 15336917 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 | |||| ||||||| |||||||||||||| || |||||||| || || || | ||| Sbjct 15336918 TCTGCG-CCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAAC 15336976 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 15336977 GAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTTCGCC 15337018 Score = 161 bits (178), Expect = 1e-34 Identities = 395/585 (68%), Gaps = 19/585 (3%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| |||| || | ||| ||||| | ||||| ||||| ||||||||| | Sbjct 4328162 TGTTTCCTATCACCTACCCCTCCATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCT 4328221 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | || ||||| || ||||| |||||| | | | ||| || || | | | Sbjct 4328222 GGACCGCAGAGGAGGTGGACCTGTCGCCGGACCTCTCCCAGTGGCAGCACCGCCTCTCCG 4328281 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || | || ||| | | ||||| ||||||| |||||| || |||| Sbjct 4328282 ACGACGAGCGCCACTTCGTCTCCCACGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCG 4328341 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC 125234 || ||| || ||| | || ||| | || || | | | || |||| || || Sbjct 4328342 TCCTCGAGAACCTGGCCGCCCGCTTCATGCGCGACGTCCAAC-TCCCCGAGGCC-CGCGC 4328399 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| || || |||||| | ||||| || |||||||| || | Sbjct 4328400 CTTCTACGGTTTCCAGATTGCAATCGAGAACATCCACTCCGAGATGTACTCCCTTCTACT 4328459 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGG 125352 || | |||||| || || | |||| || || |||| |||| |||||||| | Sbjct 4328460 CGATACGTACATCAAGGACCC-CGACGTGAAGTTTCGCCTCTTCCACGCGATCGACACCG 4328518 Query 125353 T----GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 | |||||| | ||||| |||||| | | ||||| || | | | | Sbjct 4328519 TCCCTGCCGTCGCCCGG----AAGGCCGAATGGGCTCTCCAATGGATTGA-GTCTTCCGG 4328573 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGG 125467 || | |||||| |||| || || |||||| ||| ||||||||||| || | ||| Sbjct 4328574 C--TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGC 4328631 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | || ||| |||||||| ||||||||||||||||| ||||||||||| || || | Sbjct 4328632 TCCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTC 4328690 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || || ||||||||||| ||||| |||||||| Sbjct 4328691 CAACGAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGC 4328735 >seq9 Length=34148863 Score = 159 bits (176), Expect = 5e-34 Identities = 393/585 (67%), Gaps = 17/585 (3%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| ||||||| || | | ||| ||||| | ||||| ||||| ||||||||| | Sbjct 1096416 TGTTCCCCATCACTTACCCTTCCATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCT 1096475 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| || ||||| |||||||| |||| | | ||||| || ||| | | Sbjct 1096476 GGACGGCGGAGGAGGTGGATCTGTCTCCGGACGTACCCCATTGGCAGCATCGCCTCTCCC 1096535 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | || || || ||| || | |||||||| |||| ||| || || |||| Sbjct 1096536 ACGACGAGCGCCACTTCATCTCCCACGTTCTTGCCTTCTTCGCCGCCTCAGACGGCATCG 1096595 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGC 125234 || || || || | || ||| | || || | | | || |||| ||| || Sbjct 1096596 TCCTTGAGAACCTCGCCGCCCGGTTCATGCGCGACGTCCAGC-TCCCCGAGGC-TCGCGC 1096653 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| ||| || |||||| | ||||| || |||||||| || | Sbjct 1096654 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCTGAGATGTACTCCCTCCTCCT 1096713 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGG 125352 |||| ||||| || || | || || || | ||||| || ||||| |||| Sbjct 1096714 CGACACCTACATCAAGGACCCTGA-CGAGAAGACCCGTCTCTTCCGAGCCATCGAGACGG 1096772 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGA---TGACGACAAGT 125409 | || ||| | |||||| | |||| | || ||||| || | || | Sbjct 1096773 TCCCCTCTGTCGCCCGAAAGGCCGACTGGGCCCTGCGCTGGATTGAATCTTCCGGC---- 1096828 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-T 125468 |||| ||||| || | || || |||||| || ||||| |||||||| || || | Sbjct 1096829 --TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCT 1096886 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || |||| | ||||||||||||||||||||||| |||||||| || || || | Sbjct 1096887 CCTTCTGCG-CTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCG 1096945 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| |||| || || ||||||||||| || || ||||| ||| Sbjct 1096946 AACGAGCTTATCTCCCGTGACGAGGGCCTTCATTGCGACTTCGCC 1096990 Score = 150 bits (166), Expect = 3e-31 Identities = 381/564 (68%), Gaps = 19/564 (3%) Strand=Plus/Plus Query 125018 CATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT 125077 ||| ||||| | ||||| ||||| |||||| || ||||||| || ||||| || || Sbjct 33079009 CATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCGTTCTGGACGGCGGAGGAGGTGGACCT 33079068 Query 125078 GTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||| |||||| | | | ||| | ||| | || ||||| ||| | || Sbjct 33079069 GTCGCCGGACCTCTCCCACTGGCAACACCGTCTCACCCCCGACGAGCGCCGCTTTGTCTC 33079128 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACG 125197 ||| | | |||||||| |||| ||||||||| ||||||| ||| || || | || Sbjct 33079129 CCACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCG 33079188 Query 125198 ATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | || || | | | || |||| || || || ||||| ||||| ||| Sbjct 33079189 CTTCATGCGCGACGTCCAGC-TCCCCGAGGCC-CGCGCCTTCTACGGCTTCCAGATCGCC 33079246 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||| | ||||| || |||||||| || | |||| ||| | || || Sbjct 33079247 ATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCC- 33079305 Query 125316 CAACGTAAACACATGC-TCTTTAACGCAATCGACACGGT----GCCGTCTATACGTAAAA 125370 | ||| || || |||| |||| ||||| || || |||||| || || Sbjct 33079306 CGACGACAAGTATCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCC-CG---AA 33079361 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| |||| ||||||||| | | | || | | |||||| | || | Sbjct 33079362 AGGCCGACTGGGCCCTTCGCTGGATCGATTCCTCC--GGCTCCTT-CGCCGAGCGCCTCG 33079418 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTT-TTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 | || |||||| ||| |||||||||||||| | ||| | || ||| || ||||| ||| Sbjct 33079419 TTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGC-GCTATCTTCTGG 33079477 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 |||||||| ||||| ||||||||||| || || | ||||| | || || || ||| Sbjct 33079478 CTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGAC 33079537 Query 125550 GAGGGCCTACACTGTGACTTTGCC 125573 |||||||| ||||| ||||| ||| Sbjct 33079538 GAGGGCCTCCACTGCGACTTCGCC 33079561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740991958140840