Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq10 86.0 5e-12
seq9 82.4 6e-11
>seq10
Length=33665772
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| |||||||| || || || || ||||| || || | | | || |||||||||
Sbjct 14516045 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCAAGGGTGCGACCATCCTCTAATTGT 14516104
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279
|| ||||| | || || | ||| ||||| |||||| || ||||| || ||||||
Sbjct 14516105 TTCCCAGCAAAGATTAACCTTTGCTGGTCCGGTGGAATACCCTCTTTATCTTGAATTTTA 14516164
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || ||| | || || |||||| | ||| || || | ||| ||||| || || ||
Sbjct 14516165 GCT-TTCACATTATCAATAGTATCGGAAGATTCAACTTCAAGGGTGATGGTCTTGCCGGT 14516223
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
||||| || | || ||||||||
Sbjct 14516224 GAGAGTCTTAATGAATATTTGCAT 14516247
>seq9
Length=34148863
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||||||||| || || || ||||||||||| || | | | |||| || | ||
Sbjct 33548993 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCGTCCTCCAGCTGC 33549052
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279
|| ||||| | |||| | || || || |||||| || || ||||| || |||
Sbjct 33549053 TTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTT 33549112
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
|| ||| ||| | || || || || | | || || || ||||||||||| || |||||
Sbjct 33549113 GC-CTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATGGTCTTCCCTGT 33549171
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| || |||||
Sbjct 33549172 GAGCGTCTTAACAAAGATCTGCAT 33549195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362147158345719
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |