Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq10 86.0 5e-12 seq9 82.4 6e-11 >seq10 Length=33665772 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || || ||||| || || | | | || ||||||||| Sbjct 14516045 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCAAGGGTGCGACCATCCTCTAATTGT 14516104 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 || ||||| | || || | ||| ||||| |||||| || ||||| || |||||| Sbjct 14516105 TTCCCAGCAAAGATTAACCTTTGCTGGTCCGGTGGAATACCCTCTTTATCTTGAATTTTA 14516164 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || |||||| | ||| || || | ||| ||||| || || || Sbjct 14516165 GCT-TTCACATTATCAATAGTATCGGAAGATTCAACTTCAAGGGTGATGGTCTTGCCGGT 14516223 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || | || |||||||| Sbjct 14516224 GAGAGTCTTAATGAATATTTGCAT 14516247 >seq9 Length=34148863 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| || | | | |||| || | || Sbjct 33548993 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCGTCCTCCAGCTGC 33549052 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | |||| | || || || |||||| || || ||||| || ||| Sbjct 33549053 TTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTT 33549112 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || || || || | | || || || ||||||||||| || ||||| Sbjct 33549113 GC-CTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATGGTCTTCCCTGT 33549171 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 33549172 GAGCGTCTTAACAAAGATCTGCAT 33549195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362147158345719