Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 5e-24
seq8 111 4e-19
seq11 107 4e-18
seq9 100 7e-16
seq4 100 7e-16
seq10 93.3 1e-13
seq5 93.3 1e-13
>seq6
Length=34899179
Score = 127 bits (140), Expect = 5e-24
Identities = 158/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | || ||||| ||||| || |||||||| | || || | || ||
Sbjct 13154756 AAGGACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGCCCATC 13154697
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || || ||||| |||||||||||||| || || || ||||| || || ||
Sbjct 13154696 CTCGAGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTTGTC 13154637
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525
||| |||||||| || ||||| || | || || | || | || ||||| || || || |
Sbjct 13154636 CTGTATCTTTGCCTTCACATTGTCGATAGTGTC-CGAGCTCTCAACCTCCAGAGTGATGG 13154578
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| || || || ||||| ||||| || |||||
Sbjct 13154577 TCTTCCCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544
Score = 118 bits (130), Expect = 2e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || ||||| || || | || | |||||||| ||||| ||||||||||||
Sbjct 13154545 ATCCCTCCCCTGAGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGGATATTATAGTCA 13154486
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| | || | || || || | ||| || |||||||| || |||||||| || || |||
Sbjct 13154485 GCCAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGA 13154426
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508
|| || || || || ||||| |||||||| || ||||| || | || || | || | ||
Sbjct 13154425 GGAATGCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGTGTC-CGAGCTCTC 13154367
Query 104509 TACCTCTAGTGTAATAGTCTTACC 104532
||||| || || || ||||||||
Sbjct 13154366 AACCTCAAGGGTGATGGTCTTACC 13154343
>seq8
Length=35439739
Score = 111 bits (122), Expect = 4e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||||||||| || || | || || | |||||| || || || || |||
Sbjct 1222090 GTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 1222149
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| || || || || || || || || ||||| |||||||| ||
Sbjct 1222150 GCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTTGCCTTA 1222209
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | || || || | || ||||| || || || ||||| ||||| || ||
Sbjct 1222210 ACGTTGTCGATCGTGTC-AGAGCTCTCAACCTCCAGGGTGATGGTCTTTCCAGTGAGGGT 1222268
Query 104542 TTTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 1222269 CTTGACGAAGATCTGCAT 1222286
Score = 104 bits (114), Expect = 5e-17
Identities = 144/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| | || |||| || || || || || |||||
Sbjct 26900839 GTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGCTTTCCG 26900898
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || || || || || ||||||||||| || ||
Sbjct 26900899 GCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTC 26900958
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || | ||| ||||| || || || ||||| || || || ||
Sbjct 26900959 ACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGCGTC 26901018
Query 104543 TTTACAAATATCTGCATTTTGT 104564
|| || || |||||||| ||||
Sbjct 26901019 TTCACGAAGATCTGCATCTTGT 26901040
>seq11
Length=25514024
Score = 107 bits (118), Expect = 4e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| | ||||| | ||||| || || || || ||
Sbjct 16241445 GTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTGCTTGCCC 16241504
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || ||||| || || || || || || ||||| || ||||||||||| || ||
Sbjct 16241505 GCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTC 16241564
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | ||| || | || | || || || || || || ||||| || || || ||
Sbjct 16241565 ACGTTGTCGATGGTGTC-CGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGTGAGCGT 16241623
Query 104542 TTTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 16241624 CTTCACAAAGATCTGCAT 16241641
>seq9
Length=34148863
Score = 100 bits (110), Expect = 7e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || || || || || || | ||||| || |||||||| || || ||
Sbjct 33549194 ATGCCACCCCTAAGTCTCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCT 33549253
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| || || | || || || || || || |||||||| || ||||| || || || ||
Sbjct 33549254 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGG 33549313
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508
|| || || || || ||||||||||| || |||||||| || | ||| || | || | ||
Sbjct 33549314 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTC-CGAGCTCTC 33549372
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| || || || ||||| || ||
Sbjct 33549373 CACCTCAAGGGTGATGGTCTTCCCGGT 33549399
Score = 84.2 bits (92), Expect = 5e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| || ||| || || || || ||||| || || || || ||||||||| |||
Sbjct 33079418 GTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGCGCTATCTTCTGG 33079477
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
| |||||| | ||||| ||||| || | || ||||| |||||| | || | | |||
Sbjct 33079478 CTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGAC 33079537
Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283
|| || | |||||||||||||| ||
Sbjct 33079538 GAGGGCCTCCACTGCGACTTCGCCTG 33079563
>seq4
Length=30051516
Score = 100 bits (110), Expect = 7e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| || || ||||| | ||| || |||||||| || || ||||| | ||||||||
Sbjct 3354422 AGCCTCAGAACCAGATGAAGTGTCGACTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCTG 3354363
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| | ||| || ||||||||||| | ||||| ||||| || | |||||| ||
Sbjct 3354362 CCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGGGCTATTCCCTCC 3354303
Query 104462 TTATCCTG 104469
|| |||||
Sbjct 3354302 TTGTCCTG 3354295
>seq10
Length=33665772
Score = 93.3 bits (102), Expect = 1e-13
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485
|| || | ||||||||| || || || || || || || || |||||||| || ||||||
Sbjct 14516990 AAGATCAACCTCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTTACA 14517049
Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545
|| || | || || || ||| ||||| || || || ||||| || || ||||| ||
Sbjct 14517050 TTATCAATAGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTTAGTGTCTTA 14517109
Query 104546 ACAAATATCTGCAT 104559
||||||||||||||
Sbjct 14517110 ACAAATATCTGCAT 14517123
>seq5
Length=29377369
Score = 93.3 bits (102), Expect = 1e-13
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| |||||||| | ||||| ||||| | || || || || ||||| ||
Sbjct 457952 GTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCATCCTCGAGCTGTTTCCCG 457893
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| ||||| || | || || || || || || |||||||||||
Sbjct 457892 GCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTGTCATGGATCTTTGCTTTA 457833
Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
| ||| | | || || || | || ||||| || || || || || || || || ||
Sbjct 457832 AGATTGGCGATCGTGTC-TGAGCTCTCCACCTCCAGGGTGATGGTGTTTCCGGTGAGGGT 457774
Query 104542 TTTTACAAATATCTGCAT 104559
||| ||||| || |||||
Sbjct 457773 TTTGACAAAAATTTGCAT 457756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151291313112372
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