Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 127 5e-24 seq8 111 4e-19 seq11 107 4e-18 seq9 100 7e-16 seq4 100 7e-16 seq10 93.3 1e-13 seq5 93.3 1e-13 >seq6 Length=34899179 Score = 127 bits (140), Expect = 5e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| ||||| || |||||||| | || || | || || Sbjct 13154756 AAGGACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGCCCATC 13154697 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| |||||||||||||| || || || ||||| || || || Sbjct 13154696 CTCGAGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTTGTC 13154637 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAG 104525 ||| |||||||| || ||||| || | || || | || | || ||||| || || || | Sbjct 13154636 CTGTATCTTTGCCTTCACATTGTCGATAGTGTC-CGAGCTCTCAACCTCCAGAGTGATGG 13154578 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||| ||||| || ||||| Sbjct 13154577 TCTTCCCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544 Score = 118 bits (130), Expect = 2e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || | || | |||||||| ||||| |||||||||||| Sbjct 13154545 ATCCCTCCCCTGAGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGGATATTATAGTCA 13154486 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || | ||| || |||||||| || |||||||| || || ||| Sbjct 13154485 GCCAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGA 13154426 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||| |||||||| || ||||| || | || || | || | || Sbjct 13154425 GGAATGCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGTGTC-CGAGCTCTC 13154367 Query 104509 TACCTCTAGTGTAATAGTCTTACC 104532 ||||| || || || |||||||| Sbjct 13154366 AACCTCAAGGGTGATGGTCTTACC 13154343 >seq8 Length=35439739 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||||||||| || || | || || | |||||| || || || || ||| Sbjct 1222090 GTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCCTCGAGCTGCTTGCCA 1222149 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || || || || || || || || ||||| |||||||| || Sbjct 1222150 GCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTTGCCTTA 1222209 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || || || | || ||||| || || || ||||| ||||| || || Sbjct 1222210 ACGTTGTCGATCGTGTC-AGAGCTCTCAACCTCCAGGGTGATGGTCTTTCCAGTGAGGGT 1222268 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1222269 CTTGACGAAGATCTGCAT 1222286 Score = 104 bits (114), Expect = 5e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| | || |||| || || || || || ||||| Sbjct 26900839 GTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGCTTTCCG 26900898 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || || ||||||||||| || || Sbjct 26900899 GCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTC 26900958 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | ||| ||||| || || || ||||| || || || || Sbjct 26900959 ACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGCGTC 26901018 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || || || |||||||| |||| Sbjct 26901019 TTCACGAAGATCTGCATCTTGT 26901040 >seq11 Length=25514024 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | ||||| | ||||| || || || || || Sbjct 16241445 GTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTGCTTGCCC 16241504 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || ||||| || || || || || || ||||| || ||||||||||| || || Sbjct 16241505 GCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTC 16241564 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | || | || || || || || || ||||| || || || || Sbjct 16241565 ACGTTGTCGATGGTGTC-CGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGTGAGCGT 16241623 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 16241624 CTTCACAAAGATCTGCAT 16241641 >seq9 Length=34148863 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || || || || || || | ||||| || |||||||| || || || Sbjct 33549194 ATGCCACCCCTAAGTCTCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCT 33549253 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || || |||||||| || ||||| || || || || Sbjct 33549254 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGG 33549313 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||||||||| || |||||||| || | ||| || | || | || Sbjct 33549314 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTTACATTGTCGATGGTGTC-CGAGCTCTC 33549372 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || || || ||||| || || Sbjct 33549373 CACCTCAAGGGTGATGGTCTTCCCGGT 33549399 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| || ||| || || || || ||||| || || || || ||||||||| ||| Sbjct 33079418 GTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGCGCTATCTTCTGG 33079477 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | |||||| | ||||| ||||| || | || ||||| |||||| | || | | ||| Sbjct 33079478 CTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGAC 33079537 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || || | |||||||||||||| || Sbjct 33079538 GAGGGCCTCCACTGCGACTTCGCCTG 33079563 >seq4 Length=30051516 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | ||| || |||||||| || || ||||| | |||||||| Sbjct 3354422 AGCCTCAGAACCAGATGAAGTGTCGACTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCTG 3354363 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| || ||||||||||| | ||||| ||||| || | |||||| || Sbjct 3354362 CCATCTTCCAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGGGCTATTCCCTCC 3354303 Query 104462 TTATCCTG 104469 || ||||| Sbjct 3354302 TTGTCCTG 3354295 >seq10 Length=33665772 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || || | ||||||||| || || || || || || || || |||||||| || |||||| Sbjct 14516990 AAGATCAACCTCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTTACA 14517049 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 || || | || || || ||| ||||| || || || ||||| || || ||||| || Sbjct 14517050 TTATCAATAGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTTAGTGTCTTA 14517109 Query 104546 ACAAATATCTGCAT 104559 |||||||||||||| Sbjct 14517110 ACAAATATCTGCAT 14517123 >seq5 Length=29377369 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| | ||||| ||||| | || || || || ||||| || Sbjct 457952 GTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCATCCTCGAGCTGTTTCCCG 457893 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| ||||| || | || || || || || || ||||||||||| Sbjct 457892 GCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTGTCATGGATCTTTGCTTTA 457833 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 | ||| | | || || || | || ||||| || || || || || || || || || Sbjct 457832 AGATTGGCGATCGTGTC-TGAGCTCTCCACCTCCAGGGTGATGGTGTTTCCGGTGAGGGT 457774 Query 104542 TTTTACAAATATCTGCAT 104559 ||| ||||| || ||||| Sbjct 457773 TTTGACAAAAATTTGCAT 457756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151291313112372