Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq8 93.3 4e-14
seq9 87.8 2e-12
>seq8
Length=35439739
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| || ||| |||||| ||||||||||| || || | ||| | ||||||||||||
Sbjct 26900833 TGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGC 26900892
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| || | || | ||||||||||||| ||| | | ||||||||| ||| ||
Sbjct 26900893 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTG 26900952
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||| | | || || || | || ||| ||||| || || || || || ||
Sbjct 26900953 GCCTTCACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTC 26901012
Query 48704 AGAGTTTTCACAAAAATCTGCATCGTGTC 48732
|| || ||||| || ||||||||| ||||
Sbjct 26901013 AGCGTCTTCACGAAGATCTGCATCTTGTC 26901041
>seq9
Length=34148863
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| ||||| |||||||||||||| |||| ||| ||||||||||||||
Sbjct 33548993 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCGTCCTCCAGCTGC 33549052
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || | | || | | |||||||||| || | | ||||||||| || ||
Sbjct 33549053 TTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTT 33549112
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | || || || | | |||| ||| | || ||||| || || |||
Sbjct 33549113 GCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATGGTCTTCCCTGTG 33549172
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| || || ||||| ||||||||
Sbjct 33549173 AGCGTCTTAACAAAGATCTGCAT 33549195
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| ||||| |||||||||||||| |||| || ||||||| ||||||
Sbjct 33541411 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTCTAGCTGC 33541352
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || || | || | | |||||||||| || | | ||||||||| || |||
Sbjct 33541351 TTCCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTC 33541292
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||||| | | || || || || | |||| ||| | || ||||| || ||||
Sbjct 33541291 GCCTTGACGTTGTCG--ATCGTGTCCGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCGG 33541234
Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726
|||| || || ||||| ||||||||
Sbjct 33541233 TGAGGGTCTTAACAAAGATCTGCAT 33541209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421213932301259
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |