Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 4e-14 seq9 87.8 2e-12 >seq8 Length=35439739 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| ||||||||||| || || | ||| | |||||||||||| Sbjct 26900833 TGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGC 26900892 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||||| ||| | | ||||||||| ||| || Sbjct 26900893 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTG 26900952 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | || || || | || ||| ||||| || || || || || || Sbjct 26900953 GCCTTCACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTC 26901012 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTGTC 48732 || || ||||| || ||||||||| |||| Sbjct 26901013 AGCGTCTTCACGAAGATCTGCATCTTGTC 26901041 >seq9 Length=34148863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| |||||||||||||| |||| ||| |||||||||||||| Sbjct 33548993 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCGTCCTCCAGCTGC 33549052 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | | |||||||||| || | | ||||||||| || || Sbjct 33549053 TTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTT 33549112 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | | |||| ||| | || ||||| || || ||| Sbjct 33549113 GCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATGGTCTTCCCTGTG 33549172 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| |||||||| Sbjct 33549173 AGCGTCTTAACAAAGATCTGCAT 33549195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| |||||||||||||| |||| || ||||||| |||||| Sbjct 33541411 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTCTAGCTGC 33541352 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | | |||||||||| || | | ||||||||| || ||| Sbjct 33541351 TTCCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTC 33541292 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || || || || | |||| ||| | || ||||| || |||| Sbjct 33541291 GCCTTGACGTTGTCG--ATCGTGTCCGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCGG 33541234 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || ||||| |||||||| Sbjct 33541233 TGAGGGTCTTAACAAAGATCTGCAT 33541209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421213932301259