Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq10 114 7e-21 seq5 113 2e-20 seq11 111 8e-20 seq785 109 3e-19 seq9 109 3e-19 seq6 109 3e-19 seq8 107 1e-18 seq4 107 1e-18 seq1 104 1e-17 seq7216 93.3 2e-14 seq1465 93.3 2e-14 >seq10 Length=33665772 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | || ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 870227 ATAAAAATTAAATATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 870168 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 870167 GACGCTCTAACCAACTGAGCTAATAGGCC 870139 >seq5 Length=29377369 Score = 113 bits (124), Expect = 2e-20 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| |||||||| |||| |||||||| | | |||||||| ||||||||||||||| Sbjct 1703976 AATTTCTAAAAAATATAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 1703917 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 1703916 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1703882 Score = 111 bits (122), Expect = 8e-20 Identities = 85/102 (83%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||||| | ||||| ||||| |||||||| | | |||||||| |||||||| Sbjct 28303835 GAAATATAAATTTAATGTAAAAT------GGCCCATGCAGGTTTCGAACCTGCGACCTTC 28303888 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| ||||||||||||||| |||| Sbjct 28303889 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 28303930 Score = 109 bits (120), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11431 ATATAGAATTA-ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||| ||||| || || || |||| |||||||| | | |||||||| |||||||||| Sbjct 28308065 ATATTAAATTATATTTAATATGAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGC 28308007 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| ||||||||||||||| ||||| Sbjct 28308006 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCG 28307966 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | ||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1709590 AAAAAATAATATTTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1709531 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 1709530 GACGCTCTAACCAACTGAGCTAATAGGCC 1709502 Score = 107 bits (118), Expect = 1e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 9275115 AAAATATATATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 9275056 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 9275055 GCTCTAACCAACTGAGCTAATAGGCC 9275030 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 || ||| ||| |||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 28308828 AATATCGAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 28308886 Query 11506 TCTRACCAACTGAGCTAATGGGCCG 11530 ||| ||||||||||||||| ||||| Sbjct 28308887 TCTAACCAACTGAGCTAATAGGCCG 28308911 Score = 105 bits (116), Expect = 3e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||| ||| ||| Sbjct 28303520 AATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGTTCTAACC 28303579 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 28303580 AACTGAGCTAATAGGCC 28303596 >seq11 Length=25514024 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 8870724 AAAAAATAAATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 8870783 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 8870784 CGCTCTAACCAACTGAGCTAATAGGCC 8870810 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8874376 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8874317 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 8874316 TGAGCTAATAGGCC 8874303 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8877137 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8877078 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 8877077 TGAGCTAATAGGCC 8877064 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| |||||||||| |||||||||||||||||| ||||| Sbjct 11595526 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCATTATTAGCACGACGCTCTAACCAA 11595467 Query 11515 CTGAGCTAATGGGCC 11529 | ||||||| |||| Sbjct 11595466 ATAAGCTAATAGGCC 11595452 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |||| Sbjct 22789871 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGTTCTAACCAACTGAGCTAATAGGCC 22789929 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 || || ||| ||| | |||| | ||||||||||||||||||||||| ||||| ||||| Sbjct 11595167 TTTGCACATCCAAGTCTGGAACTTGCGACCTTCGCGTTATTAGCACGATGCTCTAACCAA 11595108 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 11595107 CTGAGCTAATAGGCCG 11595092 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| |||| | | |||||||| ||||||||| ||||||||||||| ||||| ||||| Sbjct 11594618 TTGGCTCATGCAGGTCTCGAACCTACGACCTTCGTGTTATTAGCACGATGCTCTAACCAA 11594559 Query 11515 CTGAGCTAAT 11524 || ||||||| Sbjct 11594558 CTCAGCTAAT 11594549 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| ||| || ||||| |||||||||| |||||||||||| ||||| || || Sbjct 11645367 TTGGCCCATGCAAGTCTCAAACCTGCGACCTTCGCATTATTAGCACGATGCTCTAACTAA 11645308 Query 11515 CTGAGCTAAT 11524 |||||| ||| Sbjct 11645307 CTGAGCGAAT 11645298 >seq785 Length=2221 Score = 109 bits (120), Expect = 3e-19 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 || || ||||| || || |||||||||| | | |||||||| |||||||||||||||| Sbjct 215 AAATACTAAAACTATAAATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATT 156 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||||||||||| |||| Sbjct 155 AGCACGACGCTCTAACCAACTGAGCTAATAGGCC 122 >seq9 Length=34148863 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| | || |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 3164451 ATAAAAAATAATAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACG 3164393 Query 11502 ACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||| ||||||||||||||| || Sbjct 3164392 ACGCTCTAACCAACTGAGCTAATAGG 3164367 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 31086314 TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 31086255 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 31086254 CTGAGCTAATAGGCC 31086240 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| |||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3164014 TGGCTCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3163955 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 3163954 TGAGCTAATAGGCC 3163941 >seq6 Length=34899179 Score = 109 bits (120), Expect = 3e-19 Identities = 88/106 (83%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| || | | ||| || || ||||||||| | | |||||||| ||||||||| Sbjct 2761439 AAATATATAAAAACTTAAATATATAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 2761498 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||||||||| ||||||| ||||||||||||||| |||| |||| Sbjct 2761499 CGTTATTAGCACAACGCTCTAACCAACTGAGCTAATAGGCC-TCGA 2761543 Score = 109 bits (120), Expect = 3e-19 Identities = 87/104 (84%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||||| | ||||||||| | ||||||||| | | |||||||| ||||||||| Sbjct 24461183 AAAAATAGA-TAAATAAAAAAATTTAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCG 24461125 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||||||||||| || |||||||||||| |||| || Sbjct 24461124 CGTTATTAGCACGACGCTCTAACTAACTGAGCTAATAGGCCATC 24461081 Score = 107 bits (118), Expect = 1e-18 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||||| | ||||||||| | | |||||||| ||||||||||||||||| Sbjct 5227685 AATTAA--AAAAATTA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 5227739 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 5227740 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 5227772 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 2777658 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 2777599 Query 11513 AACTGAGCTAATGGGCC 11529 | |||||||||| |||| Sbjct 2777598 AGCTGAGCTAATAGGCC 2777582 >seq8 Length=35439739 Score = 107 bits (118), Expect = 1e-18 Identities = 82/97 (85%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 |||||| | | || | || || ||||||||| | | |||||||| ||||||||||||| Sbjct 8197978 ATAGAACTTAAAATACATAAA--TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTT 8198035 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| ||||||||||||||| |||| Sbjct 8198036 ATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 8198072 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 5030786 ATTGGCCCATACAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 5030845 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 5030846 ACTGAGCTAATAGGCC 5030861 >seq4 Length=30051516 Score = 107 bits (118), Expect = 1e-18 Identities = 80/93 (86%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||| || | ||| || ||||||||| | | |||||||| ||||||||||||||||| Sbjct 24013144 ATTAAAAATATTTCATATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 24013085 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 24013084 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 24013052 >seq1 Length=27573629 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || || |||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 18823411 AAAAATAAA--TGACCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 18823468 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 18823469 CTCTAACCAACTGAGCTAATAGGCC 18823493 >seq7216 Length=4348 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| | |||||||| |||||||||||||||||| | ||| Sbjct 609 TTGGCCCATGCAGGTCTCGAACCTACAACCTTCGCATTATTAGCACGACGCTCTAATCAA 550 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 549 CTGAGCTAATAGGCC 535 >seq1465 Length=3519 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| |||||||||||||| ||||||||| |||| ||||| Sbjct 2738 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAATAGCACGACTCTCTAACCAA 2797 Query 11515 CTGAGCTAATGGGCC 11529 || ||||||| |||| Sbjct 2798 CTAAGCTAATAGGCC 2812 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| |||| ||| |||||| | |||||||||||||||||||| || ||||| ||||| Sbjct 516 TTGGCTCATGCAAGTCTCGAACTTGCGACCTTCGCGTTATTAGCATGATGCTCTAACCAA 575 Query 11515 CTGAGCTAAT 11524 || ||||||| Sbjct 576 CTAAGCTAAT 585 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | | |||| | |||||||| |||||||||||||||||||| ||||| Sbjct 3137 TTGGCCCATGTAGGTCTTGAACTTACGACCTTCACGTTATTAGCACGACGCTCTAACCAA 3196 Query 11515 CTGAGCTAAT 11524 |||||| ||| Sbjct 3197 CTGAGCAAAT 3206 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261468066118684