Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq8 125 6e-24 seq6 107 2e-18 seq4576 105 6e-18 seq11 104 2e-17 seq9 104 2e-17 seq5 84.2 2e-11 >seq8 Length=35439739 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | || || ||||| || | || || ||||| || | |||||| ||| | Sbjct 1222288 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222347 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||| ||||| || ||| ||||||| | || ||||| || ||||| Sbjct 1222348 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1222407 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| ||| | ||| ||||| | | ||||| Sbjct 1222408 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACC 1222467 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || ||||| ||||||||||||||||| Sbjct 1222468 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | | || ||||| || | || || ||||| || | ||| |||||| Sbjct 4858223 CCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4858164 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | || || |||||||| || ||||||| | |||||||| || || || Sbjct 4858163 AGAGTGCGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGG 4858104 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||||||| | ||| ||||| | | ||||| Sbjct 4858103 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCCGAGCTCTCGACC 4858044 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | || ||||| || ||||| ||||| ||||| ||||||||||||| Sbjct 4858043 TCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCATGC 4857995 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||| || ||||| || | || |||||| || ||| ||||| Sbjct 1222077 CACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCCTC 1222136 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| | || ||||| || || |||||||| || ||||| | Sbjct 1222137 GAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTG 1222196 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || |||||||| ||| | ||| ||||||| | || || || | |||||||| || Sbjct 1222197 GATCTTTGCCTTAACGTTGTCGATCGTGTCAGAGCTCTCAACCTCCAGGGTGATGGTCTT 1222256 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || || || || ||||||||||| Sbjct 1222257 TCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | |||||||| || || || || || || ||| Sbjct 4857923 TCCTCGAGCTGCTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCCTTG 4857864 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | ||| ||||||| | ||||| || | || ||| Sbjct 4857863 TCCTGGATCTTGGCCTTAACATTGTCGATGGTGTCAGAGCTTTCGACCTCCAAGGTTATG 4857804 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||||||||| Sbjct 4857803 GTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 4857769 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || || ||||| || | |||||| ||| || ||| | || || Sbjct 1223248 CACGAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTC 1223307 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | || ||||| || || || || || || ||||| | Sbjct 1223308 GAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG 1223367 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| || | ||| ||||| | | || || || | |||||||| || Sbjct 1223368 GATCTTGGCCTTAACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTT 1223427 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || |||||||| ||||||||||| Sbjct 1223428 GCCAGTGAGGGTTTTCACGAAGATCTGCAT 1223457 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | || ||||| || || || || ||||| ||| Sbjct 32122386 TCCTCGAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGGGATCCCTTCCTTG 32122327 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| ||| ||||| | | || || || | ||||| Sbjct 32122326 TCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATT 32122267 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| || ||||| ||||||||||| Sbjct 32122266 GTCTTCCCCGTAAGGGTCTTCACGAAGATCTGCAT 32122232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| |||||| | ||||| | | |||||||| || || || || || || Sbjct 26900880 ATCCTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTT 26900939 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| ||| | | | ||||| | || || || | ||||| Sbjct 26900940 GTCCTGAATCTTGGCCTTCACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGAT 26900999 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||||||||| Sbjct 26901000 CGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCAT 26901035 >seq6 Length=34899179 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | ||| |||||||| || | |||||| || || ||| |||||| Sbjct 13154752 ACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGCCCATCCTCG 13154693 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || ||||||||| || || || ||||| || || || || ||||| | Sbjct 13154692 AGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGT 13154633 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || |||||||| || | ||| |||||| | | || || || | |||||||| || Sbjct 13154632 ATCTTTGCCTTCACATTGTCGATAGTGTCCGAGCTCTCAACCTCCAGAGTGATGGTCTTC 13154573 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||||||||| || ||||| Sbjct 13154572 CCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||| || | | || ||||||||| | ||||||||||| || | Sbjct 13154555 AAAAATTTGCATCCCTCCCCTGAGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGGAT 13154496 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||||| || || ||| | |||||||| || || || ||||||| | || || Sbjct 13154495 ATTATAGTCAGCCAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTCTG 13154436 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| ||||||||||| || || ||||| | || |||||||| || | ||| |||||| Sbjct 13154435 CTGGTCTGGAGGAATGCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGTGTC 13154376 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 | | || || |||| |||||||| || || Sbjct 13154375 CGAGCTCTCAACCTCAAGGGTGATGGTCTTACC 13154343 >seq4576 Length=2771 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || || | || || | |||||||| || ||||| || || ||||| Sbjct 2646 ATCCTCGAGCTGCTTGCCCGCGAAAATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTT 2587 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || || |||||| | ||| ||||| | | ||||| || | ||||| Sbjct 2586 GTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGAT 2527 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| || || || |||||||||||||| Sbjct 2526 GGTTTTTCCAGTGAGCGTCTTAACAAAGATCTGCAT 2491 >seq11 Length=25514024 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | |||||||| || || ||||| ||||| ||| Sbjct 16241487 TCCTCGAGCTGCTTGCCCGCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTG 16241546 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || ||||| ||| | ||| ||||| | | ||||| || | ||||| Sbjct 16241547 TCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATC 16241606 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||||||||| Sbjct 16241607 GTCTTCCCGGTGAGCGTCTTCACAAAGATCTGCAT 16241641 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||||| ||||| || | |||||| ||| | ||| | ||||| Sbjct 15140728 CACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTC 15140787 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || || || || ||||| | Sbjct 15140788 CAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 15140847 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||| ||| | ||| ||||| | || || |||| ||||| || || Sbjct 15140848 GATCTTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGATCGTCTT 15140907 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013 || || | ||| ||||| ||||||||||| || || Sbjct 15140908 CCCCGTCAAAGTCTTCACGAAGATCTGCATACTCAC 15140943 >seq9 Length=34148863 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | || |||||||| || | ||| ||||| || ||| | ||||| Sbjct 33541418 CACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTC 33541359 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | || |||||||| || ||||| || || ||||| | Sbjct 33541358 TAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTG 33541299 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||||||||| | ||| ||||| | | || || || | || ||||| || Sbjct 33541298 GATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGTAATGGTCTT 33541239 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || |||||||||||||||| Sbjct 33541238 CCCGGTGAGGGTCTTAACAAAGATCTGCATGC 33541207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | || |||||||| || | ||| ||||| || ||| ||||| Sbjct 33548986 CACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCGTCCTC 33549045 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || ||||||| | || |||||||| || ||||| || || ||||| | Sbjct 33549046 CAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTG 33549105 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || ||||||||||| | | ||||| | || || || | || ||||| || Sbjct 33549106 GATCTTTGCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATGGTCTT 33549165 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || |||||||||||||||| Sbjct 33549166 CCCTGTGAGCGTCTTAACAAAGATCTGCATGC 33549197 >seq5 Length=29377369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/245 (68%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTC---AATCGCAACACCAAGTGCAAAGTAGATTCCTTTTG 94824 |||| ||| || ||||| | | | || || ||||| || | ||||||||||| || Sbjct 457767 AAAAATTTGCATCCCTCCCCCCCGGAGTCTCATTACCAAATGAAGGGTAGATTCCTTGTG 457708 Query 94825 CACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884 | | |||||| | ||| | ||| |||| || || ||| ||||||| | || Sbjct 457707 GATGGAGTAATCGGCTAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGCCT 457648 Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 |||||| || ||| ||||| || ||||| | || || ||||| || ||| || Sbjct 457647 TTGCTGGTCCACAGGGATACCCTCCTTGTCTTGCATCTTAGCCTTCACATTCTCGATGGT 457588 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||| | | ||||| || | ||| ||||||| || ||||| || || | ||||| || Sbjct 457587 GTCCGAGCTCTCGACCTCGAGGGTGGTGGTTTTGCCGGTAAGGGTCTTGATGAAGATTTG 457528 Query 95005 CATGC 95009 ||||| Sbjct 457527 CATGC 457523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448250523177240