Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq8 125 6e-24
seq6 107 2e-18
seq4576 105 6e-18
seq11 104 2e-17
seq9 104 2e-17
seq5 84.2 2e-11
>seq8
Length=35439739
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| || | || || ||||| || | || || ||||| || | |||||| ||| |
Sbjct 1222288 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222347
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | |||||| ||||| || ||| ||||||| | || ||||| || |||||
Sbjct 1222348 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1222407
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || ||||| | || || ||||| ||| | ||| ||||| | | |||||
Sbjct 1222408 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACC 1222467
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || ||||| |||||||||||||||||
Sbjct 1222468 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| || | | || ||||| || | || || ||||| || | ||| ||||||
Sbjct 4858223 CCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4858164
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | || || |||||||| || ||||||| | |||||||| || || ||
Sbjct 4858163 AGAGTGCGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGG 4858104
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || ||||| | || || ||||||||| | ||| ||||| | | |||||
Sbjct 4858103 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCCGAGCTCTCGACC 4858044
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | || ||||| || ||||| ||||| ||||| |||||||||||||
Sbjct 4858043 TCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCATGC 4857995
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||| | ||| || ||||| || | || |||||| || ||| |||||
Sbjct 1222077 CACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCCTC 1222136
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || || ||||||| | || ||||| || || |||||||| || ||||| |
Sbjct 1222137 GAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTG 1222196
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| |||||||| ||| | ||| ||||||| | || || || | |||||||| ||
Sbjct 1222197 GATCTTTGCCTTAACGTTGTCGATCGTGTCAGAGCTCTCAACCTCCAGGGTGATGGTCTT 1222256
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| || || || || |||||||||||
Sbjct 1222257 TCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || || ||||||| | |||||||| || || || || || || |||
Sbjct 4857923 TCCTCGAGCTGCTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCCTTG 4857864
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| || | ||| ||||||| | ||||| || | || |||
Sbjct 4857863 TCCTGGATCTTGGCCTTAACATTGTCGATGGTGTCAGAGCTTTCGACCTCCAAGGTTATG 4857804
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || |||||||||||||||||
Sbjct 4857803 GTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 4857769
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||| | ||| | || || ||||| || | |||||| ||| || ||| | || ||
Sbjct 1223248 CACGAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTC 1223307
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || || | ||||| | || ||||| || || || || || || ||||| |
Sbjct 1223308 GAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTG 1223367
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| || | ||| ||||| | | || || || | |||||||| ||
Sbjct 1223368 GATCTTGGCCTTAACATTGTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTT 1223427
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || |||||||| |||||||||||
Sbjct 1223428 GCCAGTGAGGGTTTTCACGAAGATCTGCAT 1223457
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || ||| | ||||| | || ||||| || || || || ||||| |||
Sbjct 32122386 TCCTCGAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGCGGGATCCCTTCCTTG 32122327
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||||||| ||| ||||| | | || || || | |||||
Sbjct 32122326 TCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATT 32122267
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || ||||| || ||||| |||||||||||
Sbjct 32122266 GTCTTCCCCGTAAGGGTCTTCACGAAGATCTGCAT 32122232
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||||||||| |||||| | ||||| | | |||||||| || || || || || ||
Sbjct 26900880 ATCCTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTT 26900939
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | ||| || ||||| ||| | | | ||||| | || || || | |||||
Sbjct 26900940 GTCCTGAATCTTGGCCTTCACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGAT 26900999
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || ||||| |||||||||||
Sbjct 26901000 CGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCAT 26901035
>seq6
Length=34899179
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||| | ||| |||||||| || | |||||| || || ||| ||||||
Sbjct 13154752 ACCAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCTGCCAGTGTGCGCCCATCCTCG 13154693
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| || || ||||||||| || || || ||||| || || || || ||||| |
Sbjct 13154692 AGCTGCTTACCCGCAAAGATTAGCCTCTGTTGGTCTGGTGGGATTCCCTCCTTGTCCTGT 13154633
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| |||||||| || | ||| |||||| | | || || || | |||||||| ||
Sbjct 13154632 ATCTTTGCCTTCACATTGTCGATAGTGTCCGAGCTCTCAACCTCCAGAGTGATGGTCTTC 13154573
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || ||||||||||| || |||||
Sbjct 13154572 CCCGTGAGGGTTTTCACAAAAATTTGCAT 13154544
Score = 105 bits (116), Expect = 6e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || ||||| || | | || ||||||||| | ||||||||||| || |
Sbjct 13154555 AAAAATTTGCATCCCTCCCCTGAGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGGAT 13154496
Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887
||||| || || ||| | |||||||| || || || ||||||| | || ||
Sbjct 13154495 ATTATAGTCAGCCAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTCTG 13154436
Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
||| ||||||||||| || || ||||| | || |||||||| || | ||| ||||||
Sbjct 13154435 CTGGTCTGGAGGAATGCCCTCCTTGTCCTGTATCTTTGCCTTCACATTGTCGATAGTGTC 13154376
Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980
| | || || |||| |||||||| || ||
Sbjct 13154375 CGAGCTCTCAACCTCAAGGGTGATGGTCTTACC 13154343
>seq4576
Length=2771
Score = 105 bits (116), Expect = 6e-18
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||| ||||| || || | || || | |||||||| || ||||| || || |||||
Sbjct 2646 ATCCTCGAGCTGCTTGCCCGCGAAAATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTT 2587
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || || || |||||| | ||| ||||| | | ||||| || | |||||
Sbjct 2586 GTCCTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGAT 2527
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||||||||| || || || ||||||||||||||
Sbjct 2526 GGTTTTTCCAGTGAGCGTCTTAACAAAGATCTGCAT 2491
>seq11
Length=25514024
Score = 104 bits (114), Expect = 2e-17
Identities = 116/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || || ||||||| | |||||||| || || ||||| ||||| |||
Sbjct 16241487 TCCTCGAGCTGCTTGCCCGCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTG 16241546
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||| || ||||| ||| | ||| ||||| | | ||||| || | |||||
Sbjct 16241547 TCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATC 16241606
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || |||||||||||||||||
Sbjct 16241607 GTCTTCCCGGTGAGCGTCTTCACAAAGATCTGCAT 16241641
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||| | ||||| ||||| || | |||||| ||| | ||| | |||||
Sbjct 15140728 CACCAGGTGGAGGGTAGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTC 15140787
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || ||| | ||||| | | ||||| || || || || || || ||||| |
Sbjct 15140788 CAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 15140847
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||| ||| | ||| ||||| | || || |||| ||||| || ||
Sbjct 15140848 GATCTTCGCCTTCACGTTGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGATCGTCTT 15140907
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013
|| || | ||| ||||| ||||||||||| || ||
Sbjct 15140908 CCCCGTCAAAGTCTTCACGAAGATCTGCATACTCAC 15140943
>seq9
Length=34148863
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||| | || |||||||| || | ||| ||||| || ||| | |||||
Sbjct 33541418 CACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTC 33541359
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || || | ||||| | || |||||||| || ||||| || || ||||| |
Sbjct 33541358 TAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTG 33541299
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || ||||||||| | ||| ||||| | | || || || | || ||||| ||
Sbjct 33541298 GATCTTCGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGTAATGGTCTT 33541239
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || || || ||||||||||||||||
Sbjct 33541238 CCCGGTGAGGGTCTTAACAAAGATCTGCATGC 33541207
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||| | || |||||||| || | ||| ||||| || ||| |||||
Sbjct 33548986 CACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGCCCGTCCTC 33549045
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || || ||||||| | || |||||||| || ||||| || || ||||| |
Sbjct 33549046 CAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTG 33549105
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| ||||||||||| | | ||||| | || || || | || ||||| ||
Sbjct 33549106 GATCTTTGCCTTGACATTATCAATCGTGTCCGAACTCTCCACCTCCAAGGTAATGGTCTT 33549165
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || || || ||||||||||||||||
Sbjct 33549166 CCCTGTGAGCGTCTTAACAAAGATCTGCATGC 33549197
>seq5
Length=29377369
Score = 84.2 bits (92), Expect = 2e-11
Identities = 166/245 (68%), Gaps = 3/245 (1%)
Strand=Plus/Minus
Query 94768 AAAATTTTACACTCCTCCTCTC---AATCGCAACACCAAGTGCAAAGTAGATTCCTTTTG 94824
|||| ||| || ||||| | | | || || ||||| || | ||||||||||| ||
Sbjct 457767 AAAAATTTGCATCCCTCCCCCCCGGAGTCTCATTACCAAATGAAGGGTAGATTCCTTGTG 457708
Query 94825 CACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884
| | |||||| | ||| | ||| |||| || || ||| ||||||| | ||
Sbjct 457707 GATGGAGTAATCGGCTAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGCCT 457648
Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944
|||||| || ||| ||||| || ||||| | || || ||||| || ||| ||
Sbjct 457647 TTGCTGGTCCACAGGGATACCCTCCTTGTCTTGCATCTTAGCCTTCACATTCTCGATGGT 457588
Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004
||| | | ||||| || | ||| ||||||| || ||||| || || | ||||| ||
Sbjct 457587 GTCCGAGCTCTCGACCTCGAGGGTGGTGGTTTTGCCGGTAAGGGTCTTGATGAAGATTTG 457528
Query 95005 CATGC 95009
|||||
Sbjct 457527 CATGC 457523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448250523177240
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