Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq9 174 2e-38 seq1063 170 2e-37 seq1382 163 4e-35 seq1035 163 4e-35 seq10 156 5e-33 seq1042 93.3 5e-14 seq3 87.8 2e-12 >seq9 Length=34148863 Score = 174 bits (192), Expect = 2e-38 Identities = 187/245 (76%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 135700 TTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGT 135759 |||||| | || |||| ||||| || | ||||||||||| ||||||||| ||| Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGT 1506975 Query 135760 CGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACA 135819 || || ||||| |||||||| |||||||||||||||||| || ||||||| |||| || Sbjct 1506976 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 1507035 Query 135820 AGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATG-CTTG 135878 ||| |||| |||||||||||| | || || ||| | | ||| |||| |||| ||| Sbjct 1507036 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTG 1507094 Query 135879 TTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGG 135938 | || | ||||||||||||||| || ||||||| | |||||||| || || |||| | Sbjct 1507095 TATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTG 1507154 Query 135939 TCTTC 135943 | ||| Sbjct 1507155 TATTC 1507159 >seq1063 Length=431445 Score = 170 bits (188), Expect = 2e-37 Identities = 245/341 (72%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 135833 GATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAA 135892 ||||||||||| |||| || ||||| ||||| ||| |||| |||| || | ||||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 135893 CACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCT--GGGGTCTTCGGTGGTT 135950 |||||||| || ||||||| || |||||||| || || ||| || || ||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 135951 CTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTG 136010 | || | |||||||||| || | ||| |||| || | | | || | |||| Sbjct 54110 CCCTAGTA----CTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 136011 AGGTAGAATCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTT-ACAACA 136067 | |||||| | | | | || || |||||| |||| |||||||||| |||| | Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 136068 -----TTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAA 136122 |||| |||||||||||||| || | || |||||||||||||||| ||||| Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 136123 CAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTG 136163 |||||||||||| |||| || ||| | ||||| ||||||| Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq1382 Length=172696 Score = 163 bits (180), Expect = 4e-35 Identities = 245/344 (71%), Gaps = 17/344 (5%) Strand=Plus/Plus Query 135891 AACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCT--GGGGTCTTCGGTGG 135948 |||||||||| || |||||||| || ||||||| || | ||| || || ||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 135949 TTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGAC 136008 || || ||| |||||||||||| || | || ||||||||| | | | || || || Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 136009 TGAGGTAGAATCC-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACTTAC 136063 ||| ||||| || | | ||||||| |||||||||||||||| |||||||| Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 136064 AACA-----TTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGT 136118 || | |||| |||||||||||||| || | || ||||| |||||||||| | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 136119 TCAACAACTCTCG----TTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATC 136174 ||||||||||||| ||| ||| ||| | || |||||||| ||| | |||||| Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793 Query 136175 TGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAA 136218 ||| | | || | || | || ||||| ||||||||||| Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1035 Length=594915 Score = 163 bits (180), Expect = 4e-35 Identities = 317/462 (69%), Gaps = 52/462 (11%) Strand=Plus/Plus Query 138339 TTTGGTGTGGCAGCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGG 138395 |||||||| ||||| || || |||| |||| | |||| | | | |||| ||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGA---ATAATTGG 237052 Query 138396 ACCCTCAACCCCTTTCATATGATGGGCGT--AGCAGGTATTCTTGGTGGTGCTCTGCTCT 138453 || | ||||| || |||||||||| || || || |||| || | ||||||||| | Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTAGGAG-TATTA--GGCGCTGCTCTGCTAT 237109 Query 138454 GTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAA----CAATCA 138509 | |||||||||||| | ||| |||| ||||| | |||||||| | ||| | Sbjct 237110 GCGCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATA 237165 Query 138510 AATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCT 138569 ||||| || || ||| | || ||||||| ||||| || ||||||||||| |||||| Sbjct 237166 CATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCT 237225 Query 138570 AACCGTTACTGGTCGCAAATC-----TTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTC 138624 ||||||| ||||| |||||| || || |||||||| ||||| |||||| Sbjct 237226 AACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG---- 237281 Query 138625 ACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATT--GGTATTA- 138681 | ||||| | ||||| |||| | ||| | |||| ||| |||| |||| || Sbjct 237282 ----CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAA 237337 Query 138682 -TTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCA 138740 | ||||| ||||| || ||||| || ||||| ||||| || | || | Sbjct 237338 GTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCCC-----GTTAG------- 237385 Query 138741 GAAGATCCTGAATTCGAGACCTT----CTACACCAAGAACAT 138778 |||||||| ||||| || || || |||||||||||| || Sbjct 237386 GAAGATCCGGAATTGGATACTTTATACCTACACCAAGAATAT 237427 >seq10 Length=33665772 Score = 156 bits (172), Expect = 5e-33 Identities = 242/341 (71%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 135833 GATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAA 135892 ||||||||||| | || || ||||| ||||| |||| |||| |||| |||||||||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 135893 CACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTG--CTGGGGTCTTCGGTGGTT 135950 |||||||| || ||||||| || |||||||| || || | |||| || ||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 135951 CTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTG 136010 | || | |||||||||| || | |||| |||| || | | | || | |||| Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 136011 AGGTAGAATCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC-TTACAA-- 136065 | |||||| | | | | || || |||||| |||| |||||||| |||||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 136066 ---CATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAA 136122 |||||| | |||||||||||| || | || ||| || ||||||||| ||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 136123 CAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTG 136163 |||||| ||| ||| || ||| | ||||| ||||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1042 Length=564079 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/127 (77%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 135813 TTGGACAAGGT--TCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTA 135870 |||| ||||| | |||||| |||||||||| | || || ||||| ||||| ||| Sbjct 550862 TTGGTCAAGGAAGTGTTTCAG--ATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTT 550805 Query 135871 CATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGT 135930 |||| |||| |||||||| || |||||||| || ||||| || || ||||||| || | Sbjct 550804 CATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTT 550745 Query 135931 TGCTGGG 135937 ||||||| Sbjct 550744 TGCTGGG 550738 >seq3 Length=30470407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 191/278 (69%), Gaps = 10/278 (4%) Strand=Plus/Minus Query 135534 CTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCT---TCTAGCAACGCCA 135590 ||||| | || |||||||| || |||||| |||| |||| ||| ||| ||| | || Sbjct 4244490 CTCTATTTTATGGAAATAATATTATCTCTCATGCTATTATACCTGCATCT-GCAGCTACA 4244432 Query 135591 TCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATG 135650 | | | || || | ||||||||||| | ||| ||||| ||||| | || |||| Sbjct 4244431 --GATTTAAATTTTTACCAAATCTGGGAAGCAACATCTATTGATAAGTGGTTGTACAATG 4244374 Query 135651 GTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTC-TTACATGGGT 135709 ||||||||||| | ||| | || | || | | | | ||| ||| || ||||||| Sbjct 4244373 GTGGTCCTTATGAGCTAATTGTACTGCA-TAAATACTTGCTGT-AGCTCATTTCATGGGT 4244316 Query 135710 CGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCA 135769 || || | ||| || | | ||| ||| | ||||||| | ||| || || ||| Sbjct 4244315 CGTGATTAGGAGCTTAGCTTTCATTTGGATATTCATCCTTGGACTGCTGTTGCATATTCA 4244256 Query 135770 GCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTA 135807 || ||| ||| | |||||||||||||| | || |||| Sbjct 4244255 GCTCCT-ATGCAGTTGCTACTGCTGTTTGCTTGATCTA 4244219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627911019753600