Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq9 174 2e-38
seq1063 170 2e-37
seq1382 163 4e-35
seq1035 163 4e-35
seq10 156 5e-33
seq1042 93.3 5e-14
seq3 87.8 2e-12
>seq9
Length=34148863
Score = 174 bits (192), Expect = 2e-38
Identities = 187/245 (76%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 135700 TTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGT 135759
|||||| | || |||| ||||| || | ||||||||||| ||||||||| |||
Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGT 1506975
Query 135760 CGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACA 135819
|| || ||||| |||||||| |||||||||||||||||| || ||||||| |||| ||
Sbjct 1506976 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 1507035
Query 135820 AGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATG-CTTG 135878
||| |||| |||||||||||| | || || ||| | | ||| |||| |||| |||
Sbjct 1507036 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTG 1507094
Query 135879 TTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGG 135938
| || | ||||||||||||||| || ||||||| | |||||||| || || |||| |
Sbjct 1507095 TATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTG 1507154
Query 135939 TCTTC 135943
| |||
Sbjct 1507155 TATTC 1507159
>seq1063
Length=431445
Score = 170 bits (188), Expect = 2e-37
Identities = 245/341 (72%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 135833 GATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAA 135892
||||||||||| |||| || ||||| ||||| ||| |||| |||| || | |||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 135893 CACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCT--GGGGTCTTCGGTGGTT 135950
|||||||| || ||||||| || |||||||| || || ||| || || |||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 135951 CTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTG 136010
| || | |||||||||| || | ||| |||| || | | | || | ||||
Sbjct 54110 CCCTAGTA----CTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 136011 AGGTAGAATCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTT-ACAACA 136067
| |||||| | | | | || || |||||| |||| |||||||||| |||| |
Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 136068 -----TTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAA 136122
|||| |||||||||||||| || | || |||||||||||||||| |||||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 136123 CAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTG 136163
|||||||||||| |||| || ||| | ||||| |||||||
Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq1382
Length=172696
Score = 163 bits (180), Expect = 4e-35
Identities = 245/344 (71%), Gaps = 17/344 (5%)
Strand=Plus/Plus
Query 135891 AACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCT--GGGGTCTTCGGTGG 135948
|||||||||| || |||||||| || ||||||| || | ||| || || ||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 135949 TTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGAC 136008
|| || ||| |||||||||||| || | || ||||||||| | | | || || ||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 136009 TGAGGTAGAATCC-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACTTAC 136063
||| ||||| || | | ||||||| |||||||||||||||| ||||||||
Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 136064 AACA-----TTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGT 136118
|| | |||| |||||||||||||| || | || ||||| |||||||||| |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 136119 TCAACAACTCTCG----TTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATC 136174
||||||||||||| ||| ||| ||| | || |||||||| ||| | ||||||
Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793
Query 136175 TGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAA 136218
||| | | || | || | || ||||| |||||||||||
Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1035
Length=594915
Score = 163 bits (180), Expect = 4e-35
Identities = 317/462 (69%), Gaps = 52/462 (11%)
Strand=Plus/Plus
Query 138339 TTTGGTGTGGCAGCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGG 138395
|||||||| ||||| || || |||| |||| | |||| | | | |||| |||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGA---ATAATTGG 237052
Query 138396 ACCCTCAACCCCTTTCATATGATGGGCGT--AGCAGGTATTCTTGGTGGTGCTCTGCTCT 138453
|| | ||||| || |||||||||| || || || |||| || | ||||||||| |
Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTAGGAG-TATTA--GGCGCTGCTCTGCTAT 237109
Query 138454 GTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAA----CAATCA 138509
| |||||||||||| | ||| |||| ||||| | |||||||| | ||| |
Sbjct 237110 GCGCTATTCATGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATA 237165
Query 138510 AATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCT 138569
||||| || || ||| | || ||||||| ||||| || ||||||||||| ||||||
Sbjct 237166 CATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCT 237225
Query 138570 AACCGTTACTGGTCGCAAATC-----TTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTC 138624
||||||| ||||| |||||| || || |||||||| ||||| ||||||
Sbjct 237226 AACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG---- 237281
Query 138625 ACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATT--GGTATTA- 138681
| ||||| | ||||| |||| | ||| | |||| ||| |||| |||| ||
Sbjct 237282 ----CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAA 237337
Query 138682 -TTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCA 138740
| ||||| ||||| || ||||| || ||||| ||||| || | || |
Sbjct 237338 GTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCCC-----GTTAG------- 237385
Query 138741 GAAGATCCTGAATTCGAGACCTT----CTACACCAAGAACAT 138778
|||||||| ||||| || || || |||||||||||| ||
Sbjct 237386 GAAGATCCGGAATTGGATACTTTATACCTACACCAAGAATAT 237427
>seq10
Length=33665772
Score = 156 bits (172), Expect = 5e-33
Identities = 242/341 (71%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 135833 GATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAA 135892
||||||||||| | || || ||||| ||||| |||| |||| |||| ||||||||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 135893 CACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTG--CTGGGGTCTTCGGTGGTT 135950
|||||||| || ||||||| || |||||||| || || | |||| || |||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 135951 CTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTG 136010
| || | |||||||||| || | |||| |||| || | | | || | ||||
Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 136011 AGGTAGAATCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC-TTACAA-- 136065
| |||||| | | | | || || |||||| |||| |||||||| ||||||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 136066 ---CATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAA 136122
|||||| | |||||||||||| || | || ||| || ||||||||| |||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 136123 CAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTG 136163
|||||| ||| ||| || ||| | ||||| |||||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1042
Length=564079
Score = 93.3 bits (102), Expect = 5e-14
Identities = 98/127 (77%), Gaps = 4/127 (3%)
Strand=Plus/Minus
Query 135813 TTGGACAAGGT--TCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTA 135870
|||| ||||| | |||||| |||||||||| | || || ||||| ||||| |||
Sbjct 550862 TTGGTCAAGGAAGTGTTTCAG--ATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTT 550805
Query 135871 CATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGT 135930
|||| |||| |||||||| || |||||||| || ||||| || || ||||||| || |
Sbjct 550804 CATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTT 550745
Query 135931 TGCTGGG 135937
|||||||
Sbjct 550744 TGCTGGG 550738
>seq3
Length=30470407
Score = 87.8 bits (96), Expect = 2e-12
Identities = 191/278 (69%), Gaps = 10/278 (4%)
Strand=Plus/Minus
Query 135534 CTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCT---TCTAGCAACGCCA 135590
||||| | || |||||||| || |||||| |||| |||| ||| ||| ||| | ||
Sbjct 4244490 CTCTATTTTATGGAAATAATATTATCTCTCATGCTATTATACCTGCATCT-GCAGCTACA 4244432
Query 135591 TCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATG 135650
| | | || || | ||||||||||| | ||| ||||| ||||| | || ||||
Sbjct 4244431 --GATTTAAATTTTTACCAAATCTGGGAAGCAACATCTATTGATAAGTGGTTGTACAATG 4244374
Query 135651 GTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTC-TTACATGGGT 135709
||||||||||| | ||| | || | || | | | | ||| ||| || |||||||
Sbjct 4244373 GTGGTCCTTATGAGCTAATTGTACTGCA-TAAATACTTGCTGT-AGCTCATTTCATGGGT 4244316
Query 135710 CGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCA 135769
|| || | ||| || | | ||| ||| | ||||||| | ||| || || |||
Sbjct 4244315 CGTGATTAGGAGCTTAGCTTTCATTTGGATATTCATCCTTGGACTGCTGTTGCATATTCA 4244256
Query 135770 GCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTA 135807
|| ||| ||| | |||||||||||||| | || ||||
Sbjct 4244255 GCTCCT-ATGCAGTTGCTACTGCTGTTTGCTTGATCTA 4244219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627911019753600
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