Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq1063 154 4e-33 seq10 132 1e-26 seq9 129 2e-25 seq1382 127 6e-25 seq1042 111 5e-20 >seq1063 Length=431445 Score = 154 bits (170), Expect = 4e-33 Identities = 234/328 (71%), Gaps = 20/328 (6%) Strand=Plus/Minus Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 19808 |||||||||||| |||| || ||||||||||| |||| ||| | ||||| | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 19809 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG--CTGGCGTATTCGGTGGAT 19866 ||||| ||||||||||||| || |||||| | ||||| | |||| |||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 19867 CTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTG 19926 | || | ||||||| || ||||| || | |||||| ||||| |||| Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 19927 AGGATGTAT-CGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGAC------ATAT 19979 | | | || ||| | | | | | ||||| |||| |||||||| ||| Sbjct 54054 AAAACGAATCCGCGTTAGCAAGTGACTGA-TTCGGTAAAGAGGAAGAGACTTTACAATAG 53996 Query 19980 AATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAAT 20039 | |||||| ||||| || || || || | ||||||| || ||||||||| |||||| Sbjct 53995 AGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAAC 53936 Query 20040 AATTCTCGTTCTTTACATTTCTTTCTTG 20067 || |||||||||||||||||| |||||| Sbjct 53935 AACTCTCGTTCTTTACATTTC-TTCTTG 53909 >seq10 Length=33665772 Score = 132 bits (146), Expect = 1e-26 Identities = 229/328 (70%), Gaps = 20/328 (6%) Strand=Plus/Plus Query 19749 GATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAA 19808 |||||||||||| | || || ||||||||||| ||||| ||| | |||||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 19809 CACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG--CTGGCGTATTCGGTGGAT 19866 ||||| ||||||||||||| || |||||| | ||||| | |||| |||||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 19867 CTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTG 19926 | || | ||||||| || ||||| | || | |||||| ||||| |||| Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 19927 AGGATGTAT-CGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGAC------ATAT 19979 | | | || ||| | | | | | ||||| |||| |||||||| ||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAAGTGACTGA-TTCGGTAAAGAGGAAGAGACTTTACAATAG 4333124 Query 19980 AATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAAT 20039 | ||||| | ||| || || || || | |||||| | ||||||||| |||||| Sbjct 4333125 AGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAAC 4333184 Query 20040 AATTCTCGTTCTTTACATTTCTTTCTTG 20067 || || ||||| ||||||| |||||| Sbjct 4333185 AACTCGACTTCTTGACATTTC-TTCTTG 4333211 >seq9 Length=34148863 Score = 129 bits (142), Expect = 2e-25 Identities = 157/209 (75%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 19653 GGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTG 19712 || ||| | || ||||| || |||||| |||| || | |||| ||| |||||| Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT- 1507011 Query 19713 TTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTC 19771 ||||| | | ||||| |||| ||||| ||||| ||||||||||||| | || || || Sbjct 1507012 TTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATC 1507071 Query 19772 TGGTACTTTTAACTTTATGT-TCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGT 19830 | | | ||| ||||| |||| | ||||| | ||||||||||| ||||||||||||| | Sbjct 1507072 TAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGG 1507130 Query 19831 TCCACATGCTCGGTGTTGCTGGCGTATTC 19859 | |||||| | ||||| |||| |||||| Sbjct 1507131 TTCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1382 Length=172696 Score = 127 bits (140), Expect = 6e-25 Identities = 237/344 (69%), Gaps = 17/344 (5%) Strand=Plus/Plus Query 19807 AACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG--CTGGCGTATTCGGTGG 19864 ||||||| |||||||||||||| || ||||| | ||| | | |||| |||||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 19865 ATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAAC 19924 || || ||| ||||||||| || ||||| || || | |||| |||||| || Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 19925 TGAGGATGTATC-GCAGAACTATGGCTATAAGTTCGGGCAAG----ATGAAGAGAC---- 19975 ||| | | ||| ||| | | || || | ||||| |||| | |||||||| Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 19976 -ATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTT 20034 ||| | |||||| ||||| || || || || | ||||||| | ||||||||| || Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 20035 TCAATAATTCTCG----TTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATA 20090 |||| || ||||| ||||| |||| || | || ||| || || |||| || Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793 Query 20091 TGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAA 20134 ||| | || | | || || |||| |||||||||||||| || Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1042 Length=564079 Score = 111 bits (122), Expect = 5e-20 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 19729 TTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTA 19788 |||| ||||| ||| || ||||||||||||| || |||||||||||||| |||| | Sbjct 550862 TTGGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCA 550803 Query 19789 TGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTG 19848 || | |||||||| || || ||||| ||||||||||| || || ||||| | ||| ||| Sbjct 550802 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTG 550743 Query 19849 CTGG 19852 |||| Sbjct 550742 CTGG 550739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144429149043804