Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq9 138 2e-27
seq10 114 2e-20
seq1063 109 9e-19
seq1382 96.9 6e-15
seq1042 89.7 8e-13
seq4 86.0 1e-11
>seq9
Length=34148863
Score = 138 bits (152), Expect = 2e-27
Identities = 157/208 (75%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 211933 GGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTA 211992
||||||||||||||||| |||||| |||||||| ||||| |||| ||| |||||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 211993 TTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCA 212052
||| | | ||||| | ||||| || ||||| || |||||||||||||| |||||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 212053 GGAACATTCAACTTCATGT-TCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATT 212111
| | ||||||||||||| | ||||| | |||||||| |||||||||||||| | |
Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131
Query 212112 CCATATGGCAGGTGTTGCAGGTATGTTC 212139
|| ||| |||||| | ||| | |||
Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq10
Length=33665772
Score = 114 bits (126), Expect = 2e-20
Identities = 87/103 (84%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 212027 CAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAG 212086
|||| |||||||||||||| ||||| || || |||||||||||| | |||||||| ||||
Sbjct 4332893 CAGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAG 4332952
Query 212087 AACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGC 212129
|||| |||||||||||||| | ||| || ||| |||||| ||
Sbjct 4332953 AACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGC 4332995
>seq1063
Length=431445
Score = 109 bits (120), Expect = 9e-19
Identities = 234/344 (68%), Gaps = 23/344 (7%)
Strand=Plus/Minus
Query 212027 CAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAG 212086
|||| ||||||||||| || ||||| || || ||| |||||||| | ||||| | ||||
Sbjct 54227 CAGATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAG 54168
Query 212087 AACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTG--CAGGTATGTTCGGTGG 212144
|||| |||||||||||||| | ||| || ||| |||||| | | ||| | ||||
Sbjct 54167 AACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCG---- 54112
Query 212145 AGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACA-TCTTCACTTATCCGTGAAACCA 212203
|| || | ||||||| ||||| |||| | || |||| | ||| | |||| ||
Sbjct 54111 -GCCCTA----GTACTATGCATGGTTC-CTTGGTCCACTCTTGTTTCATCAGGGAAATCA 54058
Query 212204 CTGGTTTAGATTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC------ 212255
||| || || | | | | || || ||||| |||| ||||||||
Sbjct 54057 CTGAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACA 54000
Query 212256 ATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATT 212315
||| | || || ||||| ||||| || || | || | |||||||| ||||| ||
Sbjct 53999 ATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTT 53940
Query 212316 CAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTG 212359
||||||| | |||||| |||||| | || | |||||||
Sbjct 53939 CAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq1382
Length=172696
Score = 96.9 bits (106), Expect = 6e-15
Identities = 234/347 (67%), Gaps = 18/347 (5%)
Strand=Plus/Plus
Query 212087 AACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTG--CAGGTATGTTCGGTGG 212144
|||| |||||||||||||| ||||| | ||| |||| | | | ||| | ||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 212145 AGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCAC 212204
| ||||| ||||||||| ||||| | || || ||| | ||| | ||||||||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 212205 TGGTTTAGATTC-ACAGAACTATGGTTACAAGTTCGGACAAGAA----GAAGAGAC---- 212255
|| || || || | | ||||||| ||||| |||||| ||||||||
Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 212256 -ATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCAT 212314
||| | || || ||||| ||||| || || | || | ||| |||| ||||| |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 212315 TCAACAAC---AGC-AGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTA 212370
|||||||| || | || ||| ||| | ||| | ||||| ||||| || |
Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793
Query 212371 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCT-AAATG 212416
||| | || || | ||||| |||| ||||| |||||||| |||||
Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAAATG 123840
>seq1042
Length=564079
Score = 89.7 bits (98), Expect = 8e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 212026 TCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCA 212085
||||| ||||||||| || || || || || ||| |||||||| | |||||||| ||
Sbjct 550845 TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCT 550786
Query 212086 GAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGG 212132
|| || |||||||||||||||||||| | ||| |||| |||| ||
Sbjct 550785 GAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGG 550739
>seq4
Length=30051516
Score = 86.0 bits (94), Expect = 1e-11
Identities = 125/172 (73%), Gaps = 10/172 (6%)
Strand=Plus/Plus
Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445
||||| |||| ||||| |||||||||||||| ||||| ||||||||||| || |||||
Sbjct 1282762 GGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA- 1282820
Query 212446 GCA-TCA-GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGT- 212502
|| ||| ||| || || ||| ||| |||| | | || | || | ||||||
Sbjct 1282821 -CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTA 1282877
Query 212503 ---ATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAG 212551
|||||||| || || ||| | ||||| || |||||||| | ||| |||
Sbjct 1282878 TGGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCTAG 1282929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807481924460040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |