Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq9 138 2e-27 seq10 114 2e-20 seq1063 109 9e-19 seq1382 96.9 6e-15 seq1042 89.7 8e-13 seq4 86.0 1e-11 >seq9 Length=34148863 Score = 138 bits (152), Expect = 2e-27 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 211933 GGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTA 211992 ||||||||||||||||| |||||| |||||||| ||||| |||| ||| ||||| Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 211993 TTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCA 212052 ||| | | ||||| | ||||| || ||||| || |||||||||||||| ||||| Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 212053 GGAACATTCAACTTCATGT-TCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATT 212111 | | ||||||||||||| | ||||| | |||||||| |||||||||||||| | | Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131 Query 212112 CCATATGGCAGGTGTTGCAGGTATGTTC 212139 || ||| |||||| | ||| | ||| Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq10 Length=33665772 Score = 114 bits (126), Expect = 2e-20 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 212027 CAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAG 212086 |||| |||||||||||||| ||||| || || |||||||||||| | |||||||| |||| Sbjct 4332893 CAGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAG 4332952 Query 212087 AACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGC 212129 |||| |||||||||||||| | ||| || ||| |||||| || Sbjct 4332953 AACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGC 4332995 >seq1063 Length=431445 Score = 109 bits (120), Expect = 9e-19 Identities = 234/344 (68%), Gaps = 23/344 (7%) Strand=Plus/Minus Query 212027 CAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAG 212086 |||| ||||||||||| || ||||| || || ||| |||||||| | ||||| | |||| Sbjct 54227 CAGATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAG 54168 Query 212087 AACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTG--CAGGTATGTTCGGTGG 212144 |||| |||||||||||||| | ||| || ||| |||||| | | ||| | |||| Sbjct 54167 AACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCG---- 54112 Query 212145 AGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACA-TCTTCACTTATCCGTGAAACCA 212203 || || | ||||||| ||||| |||| | || |||| | ||| | |||| || Sbjct 54111 -GCCCTA----GTACTATGCATGGTTC-CTTGGTCCACTCTTGTTTCATCAGGGAAATCA 54058 Query 212204 CTGGTTTAGATTCACAG--AACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC------ 212255 ||| || || | | | | || || ||||| |||| |||||||| Sbjct 54057 CTGAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACA 54000 Query 212256 ATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATT 212315 ||| | || || ||||| ||||| || || | || | |||||||| ||||| || Sbjct 53999 ATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTT 53940 Query 212316 CAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTG 212359 ||||||| | |||||| |||||| | || | ||||||| Sbjct 53939 CAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq1382 Length=172696 Score = 96.9 bits (106), Expect = 6e-15 Identities = 234/347 (67%), Gaps = 18/347 (5%) Strand=Plus/Plus Query 212087 AACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTG--CAGGTATGTTCGGTGG 212144 |||| |||||||||||||| ||||| | ||| |||| | | | ||| | ||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 212145 AGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCAC 212204 | ||||| ||||||||| ||||| | || || ||| | ||| | |||||||| Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 212205 TGGTTTAGATTC-ACAGAACTATGGTTACAAGTTCGGACAAGAA----GAAGAGAC---- 212255 || || || || | | ||||||| ||||| |||||| |||||||| Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 212256 -ATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCAT 212314 ||| | || || ||||| ||||| || || | || | ||| |||| ||||| | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 212315 TCAACAAC---AGC-AGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTA 212370 |||||||| || | || ||| ||| | ||| | ||||| ||||| || | Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793 Query 212371 TGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCT-AAATG 212416 ||| | || || | ||||| |||| ||||| |||||||| ||||| Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAAATG 123840 >seq1042 Length=564079 Score = 89.7 bits (98), Expect = 8e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 212026 TCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCA 212085 ||||| ||||||||| || || || || || ||| |||||||| | |||||||| || Sbjct 550845 TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCT 550786 Query 212086 GAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGG 212132 || || |||||||||||||||||||| | ||| |||| |||| || Sbjct 550785 GAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGG 550739 >seq4 Length=30051516 Score = 86.0 bits (94), Expect = 1e-11 Identities = 125/172 (73%), Gaps = 10/172 (6%) Strand=Plus/Plus Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 ||||| |||| ||||| |||||||||||||| ||||| ||||||||||| || ||||| Sbjct 1282762 GGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA- 1282820 Query 212446 GCA-TCA-GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGT- 212502 || ||| ||| || || ||| ||| |||| | | || | || | |||||| Sbjct 1282821 -CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTA 1282877 Query 212503 ---ATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAG 212551 |||||||| || || ||| | ||||| || |||||||| | ||| ||| Sbjct 1282878 TGGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCTAG 1282929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807481924460040