Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq1063 129 7e-25
seq10 123 3e-23
seq1382 100 3e-16
seq9 98.7 1e-15
>seq1063
Length=431445
Score = 129 bits (142), Expect = 7e-25
Identities = 232/335 (69%), Gaps = 27/335 (8%)
Strand=Plus/Minus
Query 171125 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAA 171184
||||||||||| | || || || ||||| ||| |||||||| | || || | ||||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 171185 CACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCA--GGTATGTTCGGTGGTA 171242
|||||||| || ||||| | || || ||| ||||||||| ||| | |||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 171243 GTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTG 171302
| || ||| | ||||| ||||| | || |||| | | ||||| || | ||||
Sbjct 54110 --CCCT--AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 171303 AGAACGA----GAGTCAA-AACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC------ 171351
| ||||| | || | || | | || ||||| |||| ||||| ||
Sbjct 54054 AAAACGAATCCGCGTTAGCAAGT--GACTGA---TTCGGTAAAGAGGAAGAGACTTTACA 54000
Query 171352 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 171411
||| | ||||| ||||||||||| || || | |||| |||||||| ||||| ||
Sbjct 53999 ATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTT 53940
Query 171412 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446
||||||||||||||| ||||| |||||| | ||||
Sbjct 53939 CAACAACTCTCGTTCTTTACATTTCTTCTTGGCTG 53905
>seq10
Length=33665772
Score = 123 bits (136), Expect = 3e-23
Identities = 231/335 (69%), Gaps = 27/335 (8%)
Strand=Plus/Plus
Query 171125 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAA 171184
||||||||||| |||| || || ||||| |||||||||||| | || ||||| ||||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 171185 CACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG--CAGGTATGTTCGGTGGTA 171242
|||||||| || ||||| | || || ||| |||||||| | ||| | |||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 171243 GTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTG 171302
| || ||| | ||||| ||||| | || | |||| | | ||||| || | ||||
Sbjct 4333010 --CCCT--AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 171303 AGAACGA----GAGTCA-AAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC------ 171351
| ||||| | || | || | | || ||||| |||| ||||| ||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAAGT--GACT---GATTCGGTAAAGAGGAAGAGACTTTACA 4333120
Query 171352 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 171411
||| | |||||| | ||||||||| || || | |||| | || ||| ||||| ||
Sbjct 4333121 ATAGAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTT 4333180
Query 171412 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446
||||||||| ||| | ||| |||||| | ||||
Sbjct 4333181 CAACAACTCGACTTCTTGACATTTCTTCTTGGCTG 4333215
>seq1382
Length=172696
Score = 100 bits (110), Expect = 3e-16
Identities = 231/344 (67%), Gaps = 17/344 (5%)
Strand=Plus/Plus
Query 171183 AACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCA--GGTATGTTCGGTGG 171240
|||||||||| || ||||| || || | ||| |||| |||| ||| | ||||| ||
Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554
Query 171241 TAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAAC 171300
|| |||||||| ||||| ||||| | || || ||| | | ||||| || || ||
Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614
Query 171301 TGAGAACGAGAGT-CAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATA-TAAC 171358
||| ||||| | || | | || || | ||||| |||||||||| || | | | ||
Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673
Query 171359 A--------TTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCAT 171410
| |||| ||||||||||| || || | |||| ||| |||| ||||| |
Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733
Query 171411 TCAACAACTCTCG----TTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTA 171466
||||||||||||| ||| | ||| ||| | || | | || || | || |
Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793
Query 171467 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAA 171510
||| | || || | ||||| | || ||||| |||||||| ||
Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq9
Length=34148863
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085
|| || ||| | |||||||| ||| ||||| ||||| ||||| | || || |||
Sbjct 1506950 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1507009
Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145
|| ||| | | || || | ||||| || ||||||||||||||||| |||| ||
Sbjct 1507010 GTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 1507069
Query 171146 TCAGGTACGTTCAACTTCATGT-TCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204
|| | | ||||||||||||| | || || | |||||||||||||| || ||||| |
Sbjct 1507070 TCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCT 1507128
Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTC 171235
| || ||| ||||||| | ||| | |||
Sbjct 1507129 GGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570217055234760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |