Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1063 129 7e-25 seq10 123 3e-23 seq1382 100 3e-16 seq9 98.7 1e-15 >seq1063 Length=431445 Score = 129 bits (142), Expect = 7e-25 Identities = 232/335 (69%), Gaps = 27/335 (8%) Strand=Plus/Minus Query 171125 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAA 171184 ||||||||||| | || || || ||||| ||| |||||||| | || || | |||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 171185 CACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCA--GGTATGTTCGGTGGTA 171242 |||||||| || ||||| | || || ||| ||||||||| ||| | ||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 171243 GTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTG 171302 | || ||| | ||||| ||||| | || |||| | | ||||| || | |||| Sbjct 54110 --CCCT--AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 171303 AGAACGA----GAGTCAA-AACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC------ 171351 | ||||| | || | || | | || ||||| |||| ||||| || Sbjct 54054 AAAACGAATCCGCGTTAGCAAGT--GACTGA---TTCGGTAAAGAGGAAGAGACTTTACA 54000 Query 171352 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 171411 ||| | ||||| ||||||||||| || || | |||| |||||||| ||||| || Sbjct 53999 ATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTT 53940 Query 171412 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446 ||||||||||||||| ||||| |||||| | |||| Sbjct 53939 CAACAACTCTCGTTCTTTACATTTCTTCTTGGCTG 53905 >seq10 Length=33665772 Score = 123 bits (136), Expect = 3e-23 Identities = 231/335 (69%), Gaps = 27/335 (8%) Strand=Plus/Plus Query 171125 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAA 171184 ||||||||||| |||| || || ||||| |||||||||||| | || ||||| |||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 171185 CACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG--CAGGTATGTTCGGTGGTA 171242 |||||||| || ||||| | || || ||| |||||||| | ||| | ||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 171243 GTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTG 171302 | || ||| | ||||| ||||| | || | |||| | | ||||| || | |||| Sbjct 4333010 --CCCT--AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 171303 AGAACGA----GAGTCA-AAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC------ 171351 | ||||| | || | || | | || ||||| |||| ||||| || Sbjct 4333066 AAAACGAATCCGCGTTAGCAAGT--GACT---GATTCGGTAAAGAGGAAGAGACTTTACA 4333120 Query 171352 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 171411 ||| | |||||| | ||||||||| || || | |||| | || ||| ||||| || Sbjct 4333121 ATAGAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTT 4333180 Query 171412 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446 ||||||||| ||| | ||| |||||| | |||| Sbjct 4333181 CAACAACTCGACTTCTTGACATTTCTTCTTGGCTG 4333215 >seq1382 Length=172696 Score = 100 bits (110), Expect = 3e-16 Identities = 231/344 (67%), Gaps = 17/344 (5%) Strand=Plus/Plus Query 171183 AACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCA--GGTATGTTCGGTGG 171240 |||||||||| || ||||| || || | ||| |||| |||| ||| | ||||| || Sbjct 123495 AACACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGG 123554 Query 171241 TAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAAC 171300 || |||||||| ||||| ||||| | || || ||| | | ||||| || || || Sbjct 123555 CTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCAC 123614 Query 171301 TGAGAACGAGAGT-CAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATA-TAAC 171358 ||| ||||| | || | | || || | ||||| |||||||||| || | | | || Sbjct 123615 TGAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTAC 123673 Query 171359 A--------TTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCAT 171410 | |||| ||||||||||| || || | |||| ||| |||| ||||| | Sbjct 123674 AATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTT 123733 Query 171411 TCAACAACTCTCG----TTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTA 171466 ||||||||||||| ||| | ||| ||| | || | | || || | || | Sbjct 123734 TCAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATC 123793 Query 171467 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAA 171510 ||| | || || | ||||| | || ||||| |||||||| || Sbjct 123794 TGGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq9 Length=34148863 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 || || ||| | |||||||| ||| ||||| ||||| ||||| | || || ||| Sbjct 1506950 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1507009 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 || ||| | | || || | ||||| || ||||||||||||||||| |||| || Sbjct 1507010 GTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 1507069 Query 171146 TCAGGTACGTTCAACTTCATGT-TCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 || | | ||||||||||||| | || || | |||||||||||||| || ||||| | Sbjct 1507070 TCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCT 1507128 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTC 171235 | || ||| ||||||| | ||| | ||| Sbjct 1507129 GGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570217055234760