Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 102 1e-16 >seq9 Length=34148863 Score = 102 bits (112), Expect = 1e-16 Identities = 245/368 (67%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||||| || || |||||||| | || || ||||| || || ||||| Sbjct 1096992 CAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 1096933 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| ||||| ||||| || |||||||| || | ||| || ||||| |||||| Sbjct 1096932 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAG 1096873 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA---TGT 33480 ||||| || || || ||||| | || || ||| || ||| | || | | | Sbjct 1096872 ATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCA-AAC--GAGCCGGAAGATTCA 1096816 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| | ||||| |||||||| ||| | || | ||| || ||||| Sbjct 1096815 ATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGG 1096756 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 |||||| | | || || | | || || | || || |||| | || ||||| Sbjct 1096755 AAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACATC 1096696 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || || ||||| || ||||| ||||| || |||||||| | |||||||| | | Sbjct 1096695 TCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGC 1096636 Query 33661 TGTACTTC 33668 || || || Sbjct 1096635 TGGACGTC 1096628 Score = 95.1 bits (104), Expect = 2e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || |||||||| | || ||||||||||| || ||||| Sbjct 33079563 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGG 33079504 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| || || || ||||| || || | ||| || || || |||||| Sbjct 33079503 CCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAG 33079444 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAA 33448 || || || || ||| || ||||||| Sbjct 33079443 ATGCCCTCGAC-GCAGGCGAAGGCAA 33079419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622890675328440