Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq9 102 1e-16
>seq9
Length=34148863
Score = 102 bits (112), Expect = 1e-16
Identities = 245/368 (67%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| ||||| ||||| || || |||||||| | || || ||||| || || |||||
Sbjct 1096992 CAGGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 1096933
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|| ||||| ||||| ||||| || |||||||| || | ||| || ||||| ||||||
Sbjct 1096932 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAG 1096873
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA---TGT 33480
||||| || || || ||||| | || || ||| || ||| | || | | |
Sbjct 1096872 ATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCA-AAC--GAGCCGGAAGATTCA 1096816
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540
||||| | ||||| |||||||| ||| | || | ||| || |||||
Sbjct 1096815 ATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGG 1096756
Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600
|||||| | | || || | | || || | || || |||| | || |||||
Sbjct 1096755 AAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACATC 1096696
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
|| || || ||||| || ||||| ||||| || |||||||| | |||||||| | |
Sbjct 1096695 TCAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGC 1096636
Query 33661 TGTACTTC 33668
|| || ||
Sbjct 1096635 TGGACGTC 1096628
Score = 95.1 bits (104), Expect = 2e-14
Identities = 110/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| ||||| |||||||| || |||||||| | || ||||||||||| || |||||
Sbjct 33079563 CAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGG 33079504
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|||||||| ||||| || || || ||||| || || | ||| || || || ||||||
Sbjct 33079503 CCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAG 33079444
Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAA 33448
|| || || || ||| || |||||||
Sbjct 33079443 ATGCCCTCGAC-GCAGGCGAAGGCAA 33079419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622890675328440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |