Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq4576 111 2e-19
seq8 86.0 6e-12
>seq4576
Length=2771
Score = 111 bits (122), Expect = 2e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || || | ||||||||| | |||||| |||| | ||| |
Sbjct 2491 ATGCAGATCTTTGTTAAGACGCTCACTGGAAAAACCATCACCCTCGAGGTCGAAAGCTCC 2550
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | |||||| ||||| |||||||| || || |||||||| ||
Sbjct 2551 GACACCATCGACAACGTCAAAGCTAAGATCCAGGACAAAGAGGGCATCCCTCCCGACCAG 2610
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947
||||| ||||||| || ||||| || ||||| |||| | ||| || ||||| ||
Sbjct 2611 CAAAGGCTCATTTTCGCGGGCAAGCAGCTCGAGGATGGCCG-TACGCTTGCGGACTACAA 2669
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||| || ||||| || || |||| || |||||
Sbjct 2670 CATCCAGAAAGAGTCGACGCTCCACCTCGTCCT 2702
>seq8
Length=35439739
Score = 86.0 bits (94), Expect = 6e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| ||||| | || || ||||| ||||| || || || ||||| || ||
Sbjct 1222454 GACACGATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1222395
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || ||||| | | |||||| || ||||| |||| | | | | ||||||||||
Sbjct 1222394 CAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAAC 1222335
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||||| || || || || | |||||||| |||||||| || |||||
Sbjct 1222334 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 1222288
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || ||||| | ||||| || | |||||| | || | ||||| |
Sbjct 1223457 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTAGAGGTTGAATCCTCC 1223398
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || || ||||| ||||| || ||||| || ||||| ||
Sbjct 1223397 GACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCCGACCAG 1223338
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || ||||| | || || || || |||||||| | | | | | ||||||||||
Sbjct 1223337 CAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTATAAC 1223278
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || || |||| || || ||
Sbjct 1223277 ATTCAGAAGGAGTCCACCCTCCACCTCGTGCT 1223246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478618967370480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |