Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1 98.7 3e-15
seq6 89.7 1e-12
>seq1
Length=27573629
Score = 98.7 bits (108), Expect = 3e-15
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 371067 TGCTCGAAGAGACGATCCTTTGCAACGTCTCCCGCACCATGACTAATGATGGAATCCTTC 371126
|| || || || || ||||| | || | | |||||||| ||| ||| | || |
Sbjct 4727235 TGATCAAACAGCCGTTCCTTCAAGAAGTGTGCAGCACCATGTGCAATCATGCAGTCTCGC 4727176
Query 371127 TCCATCTCACCAATTCGGAGACCACCATCGCGTGACCGTCCTTCTGTTGGCGCGCGTGTA 371186
||||||||||||| || ||||||||||| || || |||||||||| ||| | |||
Sbjct 4727175 TCCATCTCACCAAACCGAAGACCACCATCTCGAGAGCGTCCTTCTGCAGGCTGTCTGGTA 4727116
Query 371187 AGTAGCTGTTGTGCACCGCGGTTGCGTGCATGTGACTTGTCAACTACCATGTGCTTGAGG 371246
|||| ||| | ||| || || | ||| ||| ||| | ||||||||||| ||
Sbjct 4727115 AGTATCTGCACAGGACCACGCCCTCGAGAATGGATCTTATCATCGACCATGTGCTTCAGT 4727056
Query 371247 CGCTGATAATAACACGGAGCAATAAAAATCATAG 371280
| ||||||||| ||| ||| ||| |||||||
Sbjct 4727055 CTCTGATAATATGTAGGACCAAGAAATATCATAG 4727022
>seq6
Length=34899179
Score = 89.7 bits (98), Expect = 1e-12
Identities = 154/220 (70%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681
||||| || ||| ||| ||||| || | ||| || |||||| | |||||| | || |
Sbjct 13941378 ATGAAAGAAGATAGCATTGAGGGGATATATGATACGCTTAAGGAGTGTGCTATAATAAGC 13941319
Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740
||| || || ||||||||||| || | ||||| | || || |||| |||||| ||
Sbjct 13941318 AAGTCAGCTGGAGGAATTGGTGTTTCTGTTCACAACATCCGAGCAACAG-GCAGTTATAT 13941260
Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800
|| || ||| ||| || ||||| | ||||| ||||| | ||||| | ||||
Sbjct 13941259 CCGTGGGACAAATGGAACATCTAATGGTATTGTTCCAATGCTAAGGGTGTTCAATGATAC 13941200
Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840
||| | || || || || || ||||| ||| | ||||||
Sbjct 13941199 TGCTCGTTATGTTGATCAAGGAGGAGGCAAGAG-AAAGGG 13941161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303232380376538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |