Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 3e-15 seq6 89.7 1e-12 >seq1 Length=27573629 Score = 98.7 bits (108), Expect = 3e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 371067 TGCTCGAAGAGACGATCCTTTGCAACGTCTCCCGCACCATGACTAATGATGGAATCCTTC 371126 || || || || || ||||| | || | | |||||||| ||| ||| | || | Sbjct 4727235 TGATCAAACAGCCGTTCCTTCAAGAAGTGTGCAGCACCATGTGCAATCATGCAGTCTCGC 4727176 Query 371127 TCCATCTCACCAATTCGGAGACCACCATCGCGTGACCGTCCTTCTGTTGGCGCGCGTGTA 371186 ||||||||||||| || ||||||||||| || || |||||||||| ||| | ||| Sbjct 4727175 TCCATCTCACCAAACCGAAGACCACCATCTCGAGAGCGTCCTTCTGCAGGCTGTCTGGTA 4727116 Query 371187 AGTAGCTGTTGTGCACCGCGGTTGCGTGCATGTGACTTGTCAACTACCATGTGCTTGAGG 371246 |||| ||| | ||| || || | ||| ||| ||| | ||||||||||| || Sbjct 4727115 AGTATCTGCACAGGACCACGCCCTCGAGAATGGATCTTATCATCGACCATGTGCTTCAGT 4727056 Query 371247 CGCTGATAATAACACGGAGCAATAAAAATCATAG 371280 | ||||||||| ||| ||| ||| ||||||| Sbjct 4727055 CTCTGATAATATGTAGGACCAAGAAATATCATAG 4727022 >seq6 Length=34899179 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||| ||||| || | ||| || |||||| | |||||| | || | Sbjct 13941378 ATGAAAGAAGATAGCATTGAGGGGATATATGATACGCTTAAGGAGTGTGCTATAATAAGC 13941319 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 ||| || || ||||||||||| || | ||||| | || || |||| |||||| || Sbjct 13941318 AAGTCAGCTGGAGGAATTGGTGTTTCTGTTCACAACATCCGAGCAACAG-GCAGTTATAT 13941260 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| || ||||| | ||||| ||||| | ||||| | |||| Sbjct 13941259 CCGTGGGACAAATGGAACATCTAATGGTATTGTTCCAATGCTAAGGGTGTTCAATGATAC 13941200 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || || ||||| ||| | |||||| Sbjct 13941199 TGCTCGTTATGTTGATCAAGGAGGAGGCAAGAG-AAAGGG 13941161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303232380376538