Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq8 118 9e-22
seq11 100 2e-16
seq5 96.9 3e-15
seq4576 95.1 1e-14
seq6 95.1 1e-14
>seq8
Length=35439739
Score = 118 bits (130), Expect = 9e-22
Identities = 168/231 (73%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| | || ||||| |||| ||| || ||||||||||| || ||||| |||||||||
Sbjct 1222288 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222347
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | || ||||| ||| | || |||| ||| |||||| |||
Sbjct 1222348 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1222407
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-C 16885
| |||||| ||||| || || || ||| || | | | | |||| ||| |||| |
Sbjct 1222408 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTAACGTTGTCGATCGTGT--CCGAGCTCTC 1222463
Query 16886 G-TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || | ||||||||| || ||||| || || || ||||| ||||||||
Sbjct 1222464 GACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514
Score = 105 bits (116), Expect = 5e-18
Identities = 166/232 (72%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||| | |||||||| |||| ||| |||||||||||||| || |||||||| |||||
Sbjct 4858224 CCCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 4858165
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
| || | |||| || | |||||||| ||| | || |||| || |||||| ||
Sbjct 4858164 AAGAGTGCGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGG 4858105
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC- 16884
| |||||| ||||| || || || ||| || | | | | |||| ||| ||||
Sbjct 4858104 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCGATTGTGT--CCGAGCTCT 4858049
Query 16885 CG-TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| |||| ||| ||||| || || || || || || || || ||||||||
Sbjct 4858048 CGACCTCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 4857997
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| |||||||||||||| || |||||||||||||| | |||| | | ||||||| ||
Sbjct 26900833 TGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGC 26900892
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
|| || || | || || ||||| || ||| || | |||||| ||||| ||| |
Sbjct 26900893 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTG 26900952
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
|||||| | | | | ||||| | ||| || | |||||| || || || |||
Sbjct 26900953 GCCTTCACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTC 26901012
Query 16913 AGCGTTTTGACAAAAATCTGCATTTTGTAGCC 16944
||||| || || || |||||||| |||| |||
Sbjct 26901013 AGCGTCTTCACGAAGATCTGCATCTTGTCGCC 26901044
Score = 102 bits (112), Expect = 7e-17
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || || ||||| ||||||| ||| |||||
Sbjct 1222075 AGCACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCC 1222134
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | || ||||| ||| | ||||||| ||| |||||| || | ||||| |||||
Sbjct 1222135 TCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCC 1222194
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| ||||| ||| || | | | | ||||| | ||| |||| ||||||||
Sbjct 1222195 TGGATCTTTGC--CTTAACGTTGTCGATCGTGTCAGAGCTCTCAACCTCCAGGGTGATGG 1222252
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| ||||| || || || ||||| || ||||||||
Sbjct 1222253 TCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || || | || || ||||||||||| || ||||| |||||||||
Sbjct 1222516 CCACCACGTAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222575
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | || ||||| || | || |||| |||||||||| |||
Sbjct 1222576 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGTTGGTCCGGAGGG 1222635
Query 16829 ACGCCCTCTTTGTC 16842
| |||||| |||||
Sbjct 1222636 ATGCCCTCCTTGTC 1222649
>seq11
Length=25514024
Score = 100 bits (110), Expect = 2e-16
Identities = 154/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || ||||||||||| || ||||||||||| || | || | ||||||| | ||
Sbjct 16241439 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTGC 16241498
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
||||||||| | || |||| || |||||| || | ||| || ||||| ||| |
Sbjct 16241499 TTGCCCGCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTG 16241558
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG-TTTCCACGGTGATGGTTTTTCCGG 16910
|||||| | | | | |||| ||| |||| || ||| | |||||| || || ||||
Sbjct 16241559 GCCTTCACGTTGTCGATGGTGT--CCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGG 16241616
Query 16911 TCAGCGTTTTGACAAAAATCTGCA----TTTTGTAG 16942
| ||||| || ||||| ||||||| ||||||||
Sbjct 16241617 TGAGCGTCTTCACAAAGATCTGCATCTGTTTTGTAG 16241652
>seq5
Length=29377369
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||| ||||| || ||| |||||||| ||| || | | |||
Sbjct 457967 AGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCATCC 457908
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | ||||| || ||| | || |||| ||| || ||| | | |||||| |||||
Sbjct 457907 TCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTGTCA 457848
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| |||||| || | | | | | ||||| | |||| |||| ||||||||
Sbjct 457847 TGGATCTTTGCT--TTAAGATTGGCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATGG 457790
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| |||||||| || |||||||||||||| |||||
Sbjct 457789 TGTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 457756
Score = 95.1 bits (104), Expect = 1e-14
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || |||| ||||| ||| || || || ||||| || ||| ||| |||||
Sbjct 457751 CCCCCCCGGAGTCTCATTACCAAATGAAGGGTAGATTCCTTGTGGATGGAGTAATCGGCT 457692
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | || |||||||| ||||| ||| | || |||| || |||||||||||
Sbjct 457691 AAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCACAGGG 457632
Query 16829 ACGCCCTCTTTGTC-GGCA-ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-C 16885
| ||||| ||||| ||| || || |||||| | | | |||| ||| |||| |
Sbjct 457631 ATACCCTCCTTGTCTTGCATCTTAGC--CTTCACATTCTCGATGGTGT--CCGAGCTCTC 457576
Query 16886 G-TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || | |||| ||||||| ||||| || || |||| || || |||||
Sbjct 457575 GACCTCGAGGGTGGTGGTTTTGCCGGTAAGGGTCTTGATGAAGATTTGCAT 457525
>seq4576
Length=2771
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| ||||| ||||| || || ||||||||||| || | || | | ||||| | ||
Sbjct 2693 TGGAGCGTCGACTCTTTCTGGATGTTGTAGTCCGCAAGCGTACGGCCATCCTCGAGCTGC 2634
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
|||||||| |||| |||| || ||||| ||| | |||||||||||| || ||
Sbjct 2633 TTGCCCGCGAAAATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATCTTA 2574
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
||| || || | | | | |||||| | || || | ||||||||||||||| |
Sbjct 2573 GCT--TTGACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTTTTTCCAG 2516
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| ||||| || ||||| ||||||||
Sbjct 2515 TGAGCGTCTTAACAAAGATCTGCAT 2491
>seq6
Length=34899179
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||| | |||||||| |||| || || || || ||||| || || || ||||| ||
Sbjct 13154543 CCCTCCCCTGAGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGGATATTATAGTCAGC 13154484
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| ||| | | ||||||||||| ||||| ||| | || |||| ||| ||||| |||
Sbjct 13154483 CAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGG 13154424
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| |||||| ||||| | ||||| |||||| | | | | |||||| | |||
Sbjct 13154423 AATGCCCTCCTTGTCCTGTATCTTTGC--CTTCACATTGTCGATAGTGTCCGAGCTCTCA 13154366
Query 16886 GTTTCCACGGTGATGGTTTTTCCGG 16910
|| | ||||||||| || ||||
Sbjct 13154365 ACCTCAAGGGTGATGGTCTTACCGG 13154341
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
||||| | || || |||||||||||||| ||||||||||| || | ||| | | |||
Sbjct 13144374 AGTACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCC 13144315
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | ||| ||||| ||| | || | || || |||||| || | ||||| || ||
Sbjct 13144314 TCAAGTTGCTTGCCAGCAAATATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCC 13144255
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | | ||||| || || || | |||||| |
Sbjct 13144254 TGGATCTTGGCT--TTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCG 13144197
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| ||||| || || ||||||||||| || |||||
Sbjct 13144196 TCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 13144163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405052162244410
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