Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq8 118 9e-22 seq11 100 2e-16 seq5 96.9 3e-15 seq4576 95.1 1e-14 seq6 95.1 1e-14 >seq8 Length=35439739 Score = 118 bits (130), Expect = 9e-22 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || ||||| |||| ||| || ||||||||||| || ||||| ||||||||| Sbjct 1222288 CCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222347 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||| ||| | || |||| ||| |||||| ||| Sbjct 1222348 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGG 1222407 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-C 16885 | |||||| ||||| || || || ||| || | | | | |||| ||| |||| | Sbjct 1222408 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTAACGTTGTCGATCGTGT--CCGAGCTCTC 1222463 Query 16886 G-TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | ||||||||| || ||||| || || || ||||| |||||||| Sbjct 1222464 GACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514 Score = 105 bits (116), Expect = 5e-18 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | |||||||| |||| ||| |||||||||||||| || |||||||| ||||| Sbjct 4858224 CCCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGC 4858165 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | |||| || | |||||||| ||| | || |||| || |||||| || Sbjct 4858164 AAGAGTGCGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGG 4858105 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC- 16884 | |||||| ||||| || || || ||| || | | | | |||| ||| |||| Sbjct 4858104 GATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTGTCGATTGTGT--CCGAGCTCT 4858049 Query 16885 CG-TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||| ||| ||||| || || || || || || || || |||||||| Sbjct 4858048 CGACCTCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 4857997 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || |||||||||||||| || |||||||||||||| | |||| | | ||||||| || Sbjct 26900833 TGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGC 26900892 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || || ||||| || ||| || | |||||| ||||| ||| | Sbjct 26900893 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTG 26900952 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | ||| || | |||||| || || || ||| Sbjct 26900953 GCCTTCACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTC 26901012 Query 16913 AGCGTTTTGACAAAAATCTGCATTTTGTAGCC 16944 ||||| || || || |||||||| |||| ||| Sbjct 26901013 AGCGTCTTCACGAAGATCTGCATCTTGTCGCC 26901044 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || || ||||| ||||||| ||| ||||| Sbjct 1222075 AGCACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCC 1222134 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| ||| | ||||||| ||| |||||| || | ||||| ||||| Sbjct 1222135 TCGAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCC 1222194 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | ||||| | ||| |||| |||||||| Sbjct 1222195 TGGATCTTTGC--CTTAACGTTGTCGATCGTGTCAGAGCTCTCAACCTCCAGGGTGATGG 1222252 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || || ||||| || |||||||| Sbjct 1222253 TCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | || || ||||||||||| || ||||| ||||||||| Sbjct 1222516 CCACCACGTAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCC 1222575 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || ||||| || | || |||| |||||||||| ||| Sbjct 1222576 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGTTGGTCCGGAGGG 1222635 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 1222636 ATGCCCTCCTTGTC 1222649 >seq11 Length=25514024 Score = 100 bits (110), Expect = 2e-16 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||| || | || | ||||||| | || Sbjct 16241439 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTGC 16241498 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||||||| | || |||| || |||||| || | ||| || ||||| ||| | Sbjct 16241499 TTGCCCGCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTG 16241558 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG-TTTCCACGGTGATGGTTTTTCCGG 16910 |||||| | | | | |||| ||| |||| || ||| | |||||| || || |||| Sbjct 16241559 GCCTTCACGTTGTCGATGGTGT--CCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGG 16241616 Query 16911 TCAGCGTTTTGACAAAAATCTGCA----TTTTGTAG 16942 | ||||| || ||||| ||||||| |||||||| Sbjct 16241617 TGAGCGTCTTCACAAAGATCTGCATCTGTTTTGTAG 16241652 >seq5 Length=29377369 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || ||| |||||||| ||| || | | ||| Sbjct 457967 AGAACCAGGTGAAGAGTGGATTCCTTCTGAATGCTGTAGTCGTCCAGAGTGCGGCCATCC 457908 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || ||| | || |||| ||| || ||| | | |||||| ||||| Sbjct 457907 TCGAGCTGTTTCCCGGCAAAGATGAGCCTCTGCTGATCCGGTGAGATGCCCTCCTTGTCA 457848 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| || | | | | | ||||| | |||| |||| |||||||| Sbjct 457847 TGGATCTTTGCT--TTAAGATTGGCGATCGTGTCTGAGCTCTCCACCTCCAGGGTGATGG 457790 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||| || |||||||||||||| ||||| Sbjct 457789 TGTTTCCGGTGAGGGTTTTGACAAAAATTTGCAT 457756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || |||| ||||| ||| || || || ||||| || ||| ||| ||||| Sbjct 457751 CCCCCCCGGAGTCTCATTACCAAATGAAGGGTAGATTCCTTGTGGATGGAGTAATCGGCT 457692 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||||||| ||||| ||| | || |||| || ||||||||||| Sbjct 457691 AAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCACAGGG 457632 Query 16829 ACGCCCTCTTTGTC-GGCA-ATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-C 16885 | ||||| ||||| ||| || || |||||| | | | |||| ||| |||| | Sbjct 457631 ATACCCTCCTTGTCTTGCATCTTAGC--CTTCACATTCTCGATGGTGT--CCGAGCTCTC 457576 Query 16886 G-TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | |||| ||||||| ||||| || || |||| || || ||||| Sbjct 457575 GACCTCGAGGGTGGTGGTTTTGCCGGTAAGGGTCTTGATGAAGATTTGCAT 457525 >seq4576 Length=2771 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||| ||||| || || ||||||||||| || | || | | ||||| | || Sbjct 2693 TGGAGCGTCGACTCTTTCTGGATGTTGTAGTCCGCAAGCGTACGGCCATCCTCGAGCTGC 2634 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 |||||||| |||| |||| || ||||| ||| | |||||||||||| || || Sbjct 2633 TTGCCCGCGAAAATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATCTTA 2574 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | | |||||| | || || | ||||||||||||||| | Sbjct 2573 GCT--TTGACGTTGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTTTTTCCAG 2516 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || ||||| |||||||| Sbjct 2515 TGAGCGTCTTAACAAAGATCTGCAT 2491 >seq6 Length=34899179 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | |||||||| |||| || || || || ||||| || || || ||||| || Sbjct 13154543 CCCTCCCCTGAGCCTCAGCACCAAGTGGAGGGTAGATTCCTTCTGGATATTATAGTCAGC 13154484 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | | ||||||||||| ||||| ||| | || |||| ||| ||||| ||| Sbjct 13154483 CAAGGTGCGGCCATCCTCCAATTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGG 13154424 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| | ||||| |||||| | | | | |||||| | ||| Sbjct 13154423 AATGCCCTCCTTGTCCTGTATCTTTGC--CTTCACATTGTCGATAGTGTCCGAGCTCTCA 13154366 Query 16886 GTTTCCACGGTGATGGTTTTTCCGG 16910 || | ||||||||| || |||| Sbjct 13154365 ACCTCAAGGGTGATGGTCTTACCGG 13154341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||| | || || |||||||||||||| ||||||||||| || | ||| | | ||| Sbjct 13144374 AGTACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCC 13144315 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| ||||| ||| | || | || || |||||| || | ||||| || || Sbjct 13144314 TCAAGTTGCTTGCCAGCAAATATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCC 13144255 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | | ||||| || || || | |||||| | Sbjct 13144254 TGGATCTTGGCT--TTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCG 13144197 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || ||||||||||| || ||||| Sbjct 13144196 TCTTTCCAGTGAGAGTTTTGACAAAGATTTGCAT 13144163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405052162244410