Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq4746 131 1e-25
seq4540 131 1e-25
seq2298 131 1e-25
seq4666 127 1e-24
seq2367 127 1e-24
seq10 122 6e-23
seq3867 107 1e-18
seq5081 102 5e-17
seq3082 102 5e-17
seq1224 102 5e-17
seq4714 95.1 8e-15
seq222 95.1 8e-15
seq1177 87.8 1e-12
seq4358 86.0 4e-12
>seq4746
Length=15790
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 15623 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 15564
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 15563 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 15529
Score = 102 bits (112), Expect = 5e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 13648 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 13589
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 13588 GCCCATATTTAGCCTT 13573
>seq4540
Length=2785
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 1986 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 2045
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 2046 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2080
>seq2298
Length=78726
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 37931 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 37990
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 37991 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 38025
Score = 96.9 bits (106), Expect = 2e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||| | |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 49805 CTCTTTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 49864
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 49865 GCCCATATTTAGCCTT 49880
Score = 84.2 bits (92), Expect = 1e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|| ||| |||||||| ||||||| |||||| || | ||||||||||||||||||||| |
Sbjct 38184 CTGTCTTTTCAAAGTCCTTTTCATCTTTCCATCGTGATACTTGTTCGCTATCGGTCTCTC 38243
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 38244 GCCCATATTTAGCCTT 38259
>seq4666
Length=16983
Score = 127 bits (140), Expect = 1e-24
Identities = 84/93 (90%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 15557 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 15498
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
|||||| ||||||||||||||||||||||||||
Sbjct 15497 TAATCCATTCATGCGCGTCACTAATTAGATGAC 15465
Score = 102 bits (112), Expect = 5e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 13559 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 13500
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 13499 GCCCATATTTAGCCTT 13484
>seq2367
Length=63200
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 38319 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 38260
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||| ||
Sbjct 38259 TAATCCATTCATGCGCGTCACTAATTAGATGATGA 38225
>seq10
Length=33665772
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||| || ||||||||| ||| || ||||||||
Sbjct 6131252 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGTAGACAGGAAAAGTGGAAATCTCGT 6131311
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 6131312 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6131346
Score = 105 bits (116), Expect = 4e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 6133256 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 6133315
Query 20007 GGTAATATTTAGCCTT 20022
|| ||||||||||||
Sbjct 6133316 GGCCATATTTAGCCTT 6133331
>seq3867
Length=26241
Score = 107 bits (118), Expect = 1e-18
Identities = 76/87 (87%), Gaps = 5/87 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||| |||||||||| |||||||||||||| || ||||||||
Sbjct 8118 AAGCCCGTTCCCTTGGCTATGGTTTCGCTGGATAGTAGATAGGGATAGTGGGAATCTCGT 8177
Query 25957 TAATCCTTTCATGCGCGTCACTAATTA 25983
|||||| |||||||| ||| |||||||
Sbjct 8178 TAATCCATTCATGCGTGTCGCTAATTA 8204
>seq5081
Length=14249
Score = 102 bits (112), Expect = 5e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 1202 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 1143
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 1142 GCCCATATTTAGCCTT 1127
>seq3082
Length=3087
Score = 102 bits (112), Expect = 5e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 732 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 791
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 792 GCCCATATTTAGCCTT 807
>seq1224
Length=3583
Score = 102 bits (112), Expect = 5e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 1359 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 1300
Query 20007 GGTAATATTTAGCCTT 20022
| ||||||||||||
Sbjct 1299 GCCCATATTTAGCCTT 1284
>seq4714
Length=16239
Score = 95.1 bits (104), Expect = 8e-15
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| |
Sbjct 8459 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 8400
Query 20007 GGTAATATTTAGCCT 20021
| |||||||||||
Sbjct 8399 GCCTATATTTAGCCT 8385
>seq222
Length=2304
Score = 95.1 bits (104), Expect = 8e-15
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 742 CTCTCTTTTCAAAGCCCTTTTCATCTTTCCCTCATGGTACTTGTTCGCTATCGGTCTCTC 683
Query 20007 GGTAATATTTAGCCT 20021
| |||||||||||
Sbjct 682 GCCCATATTTAGCCT 668
>seq1177
Length=3640
Score = 87.8 bits (96), Expect = 1e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTT-CCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005
|||||| |||||||| ||||||| |||| ||||| ||||||||||||||||||||| ||
Sbjct 3355 CTCTCTTTTCAAAGTCCTTTTCATCTTTTCCCTCGCGGTACTTGTTCGCTATCGGTATCT 3296
Query 20006 CGGTAATATTTAGCCTTA 20023
| |||||||||||||
Sbjct 3295 TGCCCATATTTAGCCTTA 3278
>seq4358
Length=18881
Score = 86.0 bits (94), Expect = 4e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| ||||||||||||| |||| |||||
Sbjct 11709 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGATATCAGTCTCTT 11650
Query 20007 GGTAATATTTAGCCT 20021
| |||||||||||
Sbjct 11649 GCCCATATTTAGCCT 11635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334917567535229
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |