Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4746 131 1e-25 seq4540 131 1e-25 seq2298 131 1e-25 seq4666 127 1e-24 seq2367 127 1e-24 seq10 122 6e-23 seq3867 107 1e-18 seq5081 102 5e-17 seq3082 102 5e-17 seq1224 102 5e-17 seq4714 95.1 8e-15 seq222 95.1 8e-15 seq1177 87.8 1e-12 seq4358 86.0 4e-12 >seq4746 Length=15790 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 15623 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 15564 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 15563 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 15529 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 13648 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 13589 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 13588 GCCCATATTTAGCCTT 13573 >seq4540 Length=2785 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1986 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 2045 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2046 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2080 >seq2298 Length=78726 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 37931 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 37990 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 37991 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 38025 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| | |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 49805 CTCTTTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 49864 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 49865 GCCCATATTTAGCCTT 49880 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 || ||| |||||||| ||||||| |||||| || | ||||||||||||||||||||| | Sbjct 38184 CTGTCTTTTCAAAGTCCTTTTCATCTTTCCATCGTGATACTTGTTCGCTATCGGTCTCTC 38243 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 38244 GCCCATATTTAGCCTT 38259 >seq4666 Length=16983 Score = 127 bits (140), Expect = 1e-24 Identities = 84/93 (90%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 15557 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 15498 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||||||||||||||||||||||| Sbjct 15497 TAATCCATTCATGCGCGTCACTAATTAGATGAC 15465 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 13559 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 13500 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 13499 GCCCATATTTAGCCTT 13484 >seq2367 Length=63200 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 38319 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 38260 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||||| || Sbjct 38259 TAATCCATTCATGCGCGTCACTAATTAGATGATGA 38225 >seq10 Length=33665772 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| || ||||||||| ||| || |||||||| Sbjct 6131252 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGTAGACAGGAAAAGTGGAAATCTCGT 6131311 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6131312 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6131346 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 6133256 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 6133315 Query 20007 GGTAATATTTAGCCTT 20022 || |||||||||||| Sbjct 6133316 GGCCATATTTAGCCTT 6133331 >seq3867 Length=26241 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 5/87 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||| |||||||||| |||||||||||||| || |||||||| Sbjct 8118 AAGCCCGTTCCCTTGGCTATGGTTTCGCTGGATAGTAGATAGGGATAGTGGGAATCTCGT 8177 Query 25957 TAATCCTTTCATGCGCGTCACTAATTA 25983 |||||| |||||||| ||| ||||||| Sbjct 8178 TAATCCATTCATGCGTGTCGCTAATTA 8204 >seq5081 Length=14249 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 1202 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 1143 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 1142 GCCCATATTTAGCCTT 1127 >seq3082 Length=3087 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 732 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 791 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 792 GCCCATATTTAGCCTT 807 >seq1224 Length=3583 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 1359 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 1300 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 1299 GCCCATATTTAGCCTT 1284 >seq4714 Length=16239 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 8459 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 8400 Query 20007 GGTAATATTTAGCCT 20021 | ||||||||||| Sbjct 8399 GCCTATATTTAGCCT 8385 >seq222 Length=2304 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||| | Sbjct 742 CTCTCTTTTCAAAGCCCTTTTCATCTTTCCCTCATGGTACTTGTTCGCTATCGGTCTCTC 683 Query 20007 GGTAATATTTAGCCT 20021 | ||||||||||| Sbjct 682 GCCCATATTTAGCCT 668 >seq1177 Length=3640 Score = 87.8 bits (96), Expect = 1e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTT-CCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||| |||||||| ||||||| |||| ||||| ||||||||||||||||||||| || Sbjct 3355 CTCTCTTTTCAAAGTCCTTTTCATCTTTTCCCTCGCGGTACTTGTTCGCTATCGGTATCT 3296 Query 20006 CGGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 3295 TGCCCATATTTAGCCTTA 3278 >seq4358 Length=18881 Score = 86.0 bits (94), Expect = 4e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||||| |||| ||||| Sbjct 11709 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGATATCAGTCTCTT 11650 Query 20007 GGTAATATTTAGCCT 20021 | ||||||||||| Sbjct 11649 GCCCATATTTAGCCT 11635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334917567535229